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yggN DUF2884 domain-containing protein YggN [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947453, updated on 10-Oct-2024

Summary

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Official Symbol
yggN
Official Full Name
DUF2884 domain-containing protein YggN
Primary source
ECOCYC:EG12705
Locus tag
b2958
See related
ASAP:ABE-0009706
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ecfF; ECK2953
Summary
First 20 aa are probable signal peptide. [More information is available at EcoGene: EG12705]. Transcription of yggN is induced upon biofilm formation compared to planktonic growth in exponential phase. [More information is available at EcoCyc: EG12705].
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Genomic context

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Sequence:
NC_000913.3 (3100904..3101623, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF1202 domain-containing protein YggM Neighboring gene L-asparaginase 2 Neighboring gene putative ribosome assembly factor YggL Neighboring gene tRNA m(7)G46 methyltransferase Neighboring gene adenine DNA glycosylase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. L-asparaginase II of Escherichia coli K-12: cloning, mapping and sequencing of the ansB gene. Bonthron DT. Gene, 1990 Jul 2. PMID 2144836
  2. In vivo substrate specificity of periplasmic disulfide oxidoreductases. Hiniker A, et al. J Biol Chem, 2004 Mar 26. PMID 14726535
  3. Characterization of the Escherichia coli sigma E regulon. Dartigalongue C, et al. J Biol Chem, 2001 Jun 15. PMID 11274153
  4. Detection of new genes in a bacterial genome using Markov models for three gene classes. Borodovsky M, et al. Nucleic Acids Res, 1995 Sep 11. PMID 7567469, Free PMC Article
  5. Analysis of the Escherichia coli gene encoding L-asparaginase II, ansB, and its regulation by cyclic AMP receptor and FNR proteins. Jennings MP, et al. J Bacteriol, 1990 Mar. PMID 2407723, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
acts_upstream_of_or_within single-species biofilm formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
DUF2884 domain-containing protein YggN

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3100904..3101623 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417433.1 DUF2884 domain-containing protein YggN [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417433.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0H3ENF4, A0A1L7AQM3, A0A2X1PNF3, A0A418GGK2, A0A7I6H6H0, A7ZR82, B3Y172
    Conserved Domains (1) summary
    PRK10626
    Location:1 → 239
    PRK10626; hypothetical protein; Provisional
Nucleotide Protein
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