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cdgI putative c-di-GMP binding protein CdgI [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946366, updated on 19-Sep-2024

Summary

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Official Symbol
cdgI
Official Full Name
putative c-di-GMP binding protein CdgI
Primary source
ECOCYC:G6971
Locus tag
b1785
See related
ASAP:ABE-0005941
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1783; yeaI
Summary
YeaI has a C-terminal putative diguanylate cyclase GGDEF domain. [More information is available at EcoGene: EG13495]. YeaI is an inner membrane protein with eight predicted transmembrane domains. [More information is available at EcoCyc: G6971].
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Genomic context

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Sequence:
NC_000913.3 (1870385..1871860)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein kinase YeaG Neighboring gene DUF444 domain-containing protein YeaH Neighboring gene diguanylate cyclase DgcJ Neighboring gene mischarged aminoacyl-tRNA deacylase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GGDEF proteins YeaI, YedQ, and YfiN reduce early biofilm formation and swimming motility in Escherichia coli. Sanchez-Torres V, et al. Appl Microbiol Biotechnol, 2011 Apr. PMID 21181144, Free PMC Article
  2. Cyclic-di-GMP-mediated signalling within the sigma network of Escherichia coli. Weber H, et al. Mol Microbiol, 2006 Nov. PMID 17010156
  3. C-di-GMP: the dawning of a novel bacterial signalling system. Römling U, et al. Mol Microbiol, 2005 Aug. PMID 16045609
  4. Gene expression patterns and differential input into curli fimbriae regulation of all GGDEF/EAL domain proteins in Escherichia coli. Sommerfeldt N, et al. Microbiology (Reading), 2009 Apr. PMID 19332833
  5. Characterization of the rdar morphotype, a multicellular behaviour in Enterobacteriaceae. Römling U. Cell Mol Life Sci, 2005 Jun. PMID 15818467, Free PMC Article

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. YeaI, YedQ, and YfiN are active diguanylate cyclases that reduce motility, eDNA, and early biofilm formation.
    Title: GGDEF proteins YeaI, YedQ, and YfiN reduce early biofilm formation and swimming motility in Escherichia coli.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables diguanylate cyclase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables diguanylate cyclase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cell adhesion involved in single-species biofilm formation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in negative regulation of bacterial-type flagellum-dependent cell motility IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within negative regulation of bacterial-type flagellum-dependent cell motility IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative c-di-GMP binding protein CdgI

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1870385..1871860
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416299.1 putative c-di-GMP binding protein CdgI [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416299.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7H9NEA1
    Conserved Domains (2) summary
    pfam00990
    Location:328 → 485
    GGDEF; Diguanylate cyclase, GGDEF domain
    cl29069
    Location:89 → 319
    MASE4; Membrane-associated sensor, integral membrane domain
Nucleotide Protein
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