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ychA transglutaminase-like/TPR repeat-containing protein [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945784, updated on 19-Sep-2024

Summary

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Official Symbol
ychA
Official Full Name
transglutaminase-like/TPR repeat-containing protein
Primary source
ECOCYC:EG11251
Locus tag
b1214
See related
ASAP:ABE-0004074
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1202; sirB1
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Genomic context

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Sequence:
NC_000913.3 (1267320..1268129)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene peptide chain release factor RF1 Neighboring gene protein-(glutamine-N(5)) methyltransferase Neighboring gene SirB family protein YchQ Neighboring gene 3-deoxy-D-manno-octulosonate 8-phosphate synthase Neighboring gene small toxic polypeptide LdrA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map (supplement). Oshima T, et al. DNA Res, 1996 Jun 30. PMID 8905239
  2. The kdsA gene coding for 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase is part of an operon in Escherichia coli. Woisetschläger M, et al. Mol Gen Genet, 1987 May. PMID 3039295
  3. Cloning and sequencing of a previously unidentified gene that is involved in the biosynthesis of heme in Escherichia coli. Nakayashiki T, et al. Gene, 1995 Feb 3. PMID 7883187
  4. BOMP: a program to predict integral beta-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria. Berven FS, et al. Nucleic Acids Res, 2004 Jul 1. PMID 15215418, Free PMC Article
  5. Expression of genes kdsA and kdsB involved in 3-deoxy-D-manno-octulosonic acid metabolism and biosynthesis of enterobacterial lipopolysaccharide is growth phase regulated primarily at the transcriptional level in Escherichia coli K-12. Strohmaier H, et al. J Bacteriol, 1995 Aug. PMID 7543480, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
transglutaminase-like/TPR repeat-containing protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1267320..1268129
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415732.1 transglutaminase-like/TPR repeat-containing protein [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415732.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8T6Q4W7
    Conserved Domains (2) summary
    PRK10941
    Location:1 → 269
    PRK10941; tetratricopeptide repeat-containing protein
    sd00005
    Location:187 → 210
    TPR; TPR repeat [structural motif]
Nucleotide Protein
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Gene LinkOut

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