U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ybiV sugar phosphatase YbiV [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945432, updated on 10-Oct-2024

Summary

Go to the top of the page Help
Official Symbol
ybiV
Official Full Name
sugar phosphatase YbiV
Primary source
ECOCYC:G6425
Locus tag
b0822
See related
ASAP:ABE-0002807
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0812
Summary
HAD superfamily. [More information is available at EcoGene: EG13327]. YbiV is a sugar phosphatase belonging to the family of type II haloacid dehalogenase (HAD)-like hydrolases . [More information is available at EcoCyc: G6425].
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Sequence:
NC_000913.3 (859213..860028, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative ATP-binding protein YbiT Neighboring gene DUF1479 domain-containing protein YbiU Neighboring gene putative pyruvate formate lyase Neighboring gene putative pyruvate formate-lyase activating enzyme YbiY

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Detection of active sorbitol-6-phosphate phosphatase in the haloacid dehalogenase-like hydrolase superfamily. Chin T, et al. J Gen Appl Microbiol, 2018 Nov 9. PMID 29743459
  2. Metabolomics approach for enzyme discovery. Saito N, et al. J Proteome Res, 2006 Aug. PMID 16889420
  3. Switching of the bacterial flagellar motor near zero load. Yuan J, et al. J Mol Biol, 2009 Jul 17. PMID 19467245, Free PMC Article
  4. YbiV from Escherichia coli K12 is a HAD phosphatase. Roberts A, et al. Proteins, 2005 Mar 1. PMID 15657928
  5. Enzyme genomics: Application of general enzymatic screens to discover new enzymes. Kuznetsova E, et al. FEMS Microbiol Rev, 2005 Apr. PMID 15808744

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. YbiV may be a sugar phosphatase (HAD phosphatase)
    Title: YbiV from Escherichia coli K12 is a HAD phosphatase.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables fructose-1-phosphatase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables magnesium ion binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables magnesium ion binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables phosphatase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables sorbitol-6-phosphatase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables sugar-phosphatase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables sugar-phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
sugar phosphatase YbiV
NP_415343.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    859213..860028 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415343.1 sugar phosphatase YbiV [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415343.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0AAN5F9U0, A0AAQ2RB70
    Conserved Domains (1) summary
    cd07518
    Location:4 → 260
    HAD_YbiV-Like; Escherichia coli YbiV sugar phosphatase/phosphotransferase and related proteins; belongs to the haloacid dehalogenase-like superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.