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ynfF putative selenate reductase YnfF [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945268, updated on 10-Oct-2024

Summary

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Official Symbol
ynfF
Official Full Name
putative selenate reductase YnfF
Primary source
ECOCYC:G6846
Locus tag
b1588
See related
ASAP:ABE-0005307
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1583
Summary
Verified Tat substrate: [More information is available at EcoGene: EG13844]. YnfF is highly similar to DmsA, the catalytic subunit of the dimethyl sulfoxide reductase heterotrimer, and cross-reacts with an anti-DmsA antibody. [More information is available at EcoCyc: G6846].
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Genomic context

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Sequence:
NC_000913.3 (1660556..1662979)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF1161 domain-containing protein YnfD Neighboring gene putative selenate reductase YnfE Neighboring gene putative oxidoreductase YnfG Neighboring gene putative menaquinol dehydrogenase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Activation and repression at the Escherichia coli ynfEFGHI operon promoter. Xu M, et al. J Bacteriol, 2009 May. PMID 19251855, Free PMC Article
  2. A genetic analysis of in vivo selenate reduction by Salmonella enterica serovar Typhimurium LT2 and Escherichia coli K12. Guymer D, et al. Arch Microbiol, 2009 Jun. PMID 19415239
  3. Molybdenum cofactor-dependent resistance to N-hydroxylated base analogs in Escherichia coli is independent of MobA function. Kozmin SG, et al. Mutat Res, 2007 Jun 1. PMID 17349664, Free PMC Article
  4. Differential Interactions between Tat-specific redox enzyme peptides and their chaperones. Chan CS, et al. J Bacteriol, 2009 Apr. PMID 19151138, Free PMC Article
  5. Pathfinders and trailblazers: a prokaryotic targeting system for transport of folded proteins. Sargent F, et al. FEMS Microbiol Lett, 2006 Jan. PMID 16445746

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
  
enables dimethyl sulfoxide reductase activity IEA
Inferred from Electronic Annotation
more info
  
enables electron transfer activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables molybdenum ion binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables molybdenum ion binding IEA
Inferred from Electronic Annotation
more info
  
enables molybdopterin cofactor binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables selenate reductase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
involved_in anaerobic respiration IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in anaerobic respiration NAS
Non-traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
is_active_in outer membrane-bounded periplasmic space IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of oxidoreductase complex NAS
Non-traceable Author Statement
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative selenate reductase YnfF
NP_416105.4

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1660556..1662979
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416105.4 putative selenate reductase YnfF [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416105.4

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A5C9ARG2, A0A6N8QT60, A0A7T2J4N6, A0A8E0FQI4, A0AAN3NFN9, A0AAQ2RAI5, Q6EWW7
    Conserved Domains (1) summary
    TIGR02166
    Location:14 → 807
    dmsA_ynfE; anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family
Nucleotide Protein
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