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cynR DNA-binding transcriptional dual regulator CynR [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945001, updated on 19-Sep-2024

Summary

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Official Symbol
cynR
Official Full Name
DNA-binding transcriptional dual regulator CynR
Primary source
ECOCYC:EG11421
Locus tag
b0338
See related
ASAP:ABE-0001165
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0335
Summary
The CynR translation start site has been verified by start codon mutagenesis (Lamblin, 1993). [More information is available at EcoGene: EG11421].
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Genomic context

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Sequence:
NC_000913.3 (357791..358690, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene propionyl-CoA synthetase Neighboring gene cytosine transporter Neighboring gene cytosine/isoguanine deaminase Neighboring gene carbonic anhydrase 1 Neighboring gene cyanase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Crystal structure of a full-length LysR-type transcriptional regulator, CbnR: unusual combination of two subunit forms and molecular bases for causing and changing DNA bend. Muraoka S, et al. J Mol Biol, 2003 May 2. PMID 12706716
  2. The oligomerization of CynR in Escherichia coli. Knapp GS, et al. Protein Sci, 2009 Nov. PMID 19760662, Free PMC Article
  3. Expression and purification of the cynR regulatory gene product: CynR is a DNA-binding protein. Lamblin AF, et al. J Bacteriol, 1993 Dec. PMID 8253686, Free PMC Article
  4. The Escherichia coli K-12 cyn operon is positively regulated by a member of the lysR family. Sung YC, et al. J Bacteriol, 1992 Jun. PMID 1592818, Free PMC Article
  5. Functional analysis of the Escherichia coli K-12 cyn operon transcriptional regulation. Lamblin AF, et al. J Bacteriol, 1994 Nov. PMID 7961413, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
part_of protein-DNA complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
DNA-binding transcriptional dual regulator CynR

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    357791..358690 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_414872.3 DNA-binding transcriptional dual regulator CynR [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_414872.3

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6N3HYV0
    Conserved Domains (1) summary
    PRK11242
    Location:1 → 294
    PRK11242; DNA-binding transcriptional regulator CynR; Provisional
Nucleotide Protein
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