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cdaR DNA-binding transcriptional activator CdaR [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 944860, updated on 19-Sep-2024

Summary

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Official Symbol
cdaR
Official Full Name
DNA-binding transcriptional activator CdaR
Primary source
ECOCYC:EG12335
Locus tag
b0162
See related
ASAP:ABE-0000554
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0161; sdaR; yaeG
Summary
The "Carbohydrate diacid regulator," CdaR, or "sugar diacid regulator," SdaR, regulates genes involved in the uptake and metabolism of galactarate and glucarate, and it is also autoregulated . [More information is available at EcoCyc: EG12335].
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Genomic context

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Sequence:
NC_000913.3 (182463..183620)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene dGTP triphosphohydrolase Neighboring gene periplasmic serine endoprotease DegP Neighboring gene DUF3461 domain-containing protein YaeH Neighboring gene phosphodiesterase YaeI

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phosphotransferase-mediated transport of the osmolyte 2-O-alpha-mannosyl-D-glycerate in Escherichia coli occurs by the product of the mngA (hrsA) gene and is regulated by the mngR (farR) gene product acting as repressor. Sampaio MM, et al. J Biol Chem, 2004 Feb 13. PMID 14645248
  2. Systematic sequencing of the Escherichia coli genome: analysis of the 2.4-4.1 min (110,917-193,643 bp) region. Fujita N, et al. Nucleic Acids Res, 1994 May 11. PMID 8202364, Free PMC Article
  3. A common regulator for the operons encoding the enzymes involved in D-galactarate, D-glucarate, and D-glycerate utilization in Escherichia coli. Monterrubio R, et al. J Bacteriol, 2000 May. PMID 10762278, Free PMC Article
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
DNA-binding transcriptional activator CdaR

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    182463..183620
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_414704.4 DNA-binding transcriptional activator CdaR [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_414704.4

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S7RE08, A0AAE9TLC4
    Conserved Domains (1) summary
    PRK11477
    Location:1 → 385
    PRK11477; CdaR family transcriptional regulator
Nucleotide Protein
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