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slrR transcriptional regulator of autolysin genes (biofilm formation) [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 938581, updated on 6-Oct-2023

Summary

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Gene symbol
slrR
Gene description
transcriptional regulator of autolysin genes (biofilm formation)
Locus tag
BSU_34380
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU34380
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Genomic context

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Sequence:
NC_000964.3 (3530101..3530559)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene protein tyrosine kinase involved in biofilm matrix formation Neighboring gene modulator of protein tyrosine kinase EpsB involved in biofilm matrix formation Neighboring gene para-nitrobenzyl esterase (intracellular esterase B) Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SigmaX is involved in controlling Bacillus subtilis biofilm architecture through the AbrB homologue Abh. Murray EJ, et al. J Bacteriol, 2009 Nov. PMID 19767430, Free PMC Article
  2. Regulation of the response regulator gene degU through the binding of SinR/SlrR and exclusion of SinR/SlrR by DegU in Bacillus subtilis. Ogura M, et al. J Bacteriol, 2014 Feb. PMID 24317403, Free PMC Article
  3. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  4. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  5. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
transcriptional regulator of autolysin genes (biofilm formation)
NP_391318.1
  • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 18430133, 18647168, 20923420, 28546427; Product type r: regulator

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_391318.1 transcriptional regulator of autolysin genes (biofilm formation) [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_391318.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0D1KRB4
    Conserved Domains (3) summary
    smart00530
    Location:6 → 61
    HTH_XRE; Helix-turn-helix XRE-family like proteins
    COG1396
    Location:1 → 128
    HipB; Transcriptional regulator, contains XRE-family HTH domain [Transcription]
    pfam08671
    Location:124 → 148
    SinI; Anti-repressor SinI
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P71049.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases