U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ispF 2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 936634, updated on 12-Feb-2021

Summary

Go to the top of the page Help
Gene symbol
ispF
Gene description
2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase
Locus tag
BSU_00910
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU00910
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Sequence:
NC_000964.3 (110480..110956)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene diadenylate cyclase; DNA integrity scanning protein; cell cycle checkpoint DNA scanning protein Neighboring gene putative membrane protein possibly involved in RNA binding Neighboring gene 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, nonmevalonate isoprenoid pathway Neighboring gene glutamyl-tRNA synthetase Neighboring gene serine O-acetyltransferase Neighboring gene dual cysteinyl-tRNA synthetase; cysteine persulfide synthase

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Crystal structure of IspF from Bacillus subtilis and absence of protein complex assembly amongst IspD/IspE/IspF enzymes in the MEP pathway. Liu Z, et al. Biosci Rep, 2018 Feb 28. PMID 29335298, Free PMC Article
  2. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  3. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  4. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
  5. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. In this work, the high-resolution crystal structures of IspF in native and complex with cytidine 5'-diphospate (CMP) from B. subtilis have been determined.
    Title: Crystal structure of IspF from Bacillus subtilis and absence of protein complex assembly amongst IspD/IspE/IspF enzymes in the MEP pathway.
Submit: New GeneRIF Correction

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase
NP_387972.1
  • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 9622350, 11997478, 12270818, 12682299, 17458547, 23840410; Product type e : enzyme

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_387972.1 2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_387972.1

    Status: PROVISIONAL

    Conserved Domains (1) summary
    pfam02542
    Location:2 → 156
    YgbB; YgbB family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
5IWX_A.1
5IWX_B.1
5IWX_C.1
5IWX_D.1
5IWX_E.1
5IWX_F.1
5IWY_A.1
5IWY_B.1
5IWY_C.1
5IWY_D.1
5IWY_E.1
5IWY_F.1
Q06756.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases