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yfiR transcriptional regulator (TetR/AcrR family) [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 936176, updated on 12-Feb-2021

Summary

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Gene symbol
yfiR
Gene description
transcriptional regulator (TetR/AcrR family)
Locus tag
BSU_08370
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU08370
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Genomic context

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Sequence:
NC_000964.3 (911964..912581, complement)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene secreted esterase / acylglycerol lipase Neighboring gene acetyl-glucosamine metabolite exporter component involved in biofilm formation Neighboring gene putative efflux transporter Neighboring gene bacillithiol S-transferase Neighboring gene putative efflux transporter Neighboring gene putative transcriptional regulator (MarR family)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Crystal structure of YfiR, an unusual TetR/CamR-type putative transcriptional regulator from Bacillus subtilis. Rajan SS, et al. Proteins, 2006 Oct 1. PMID 16862575
  2. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  3. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  4. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
  5. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
transcriptional regulator (TetR/AcrR family)
NP_388718.1
  • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 16862575; Product type r: regulator

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    911964..912581 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_388718.1 transcriptional regulator (TetR/AcrR family) [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_388718.1

    Status: PROVISIONAL

    Conserved Domains (2) summary
    pfam00440
    Location:17 → 63
    TetR_N; Bacterial regulatory proteins, tetR family
    pfam17922
    Location:87 → 186
    TetR_C_17; Tetracyclin repressor-like, C-terminal domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O31560.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials