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sigQ anti-SigP(YlaC) sigma factor [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 935961, updated on 6-Oct-2023

Summary

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Gene symbol
sigQ
Gene description
anti-SigP(YlaC) sigma factor
Locus tag
BSU_14740
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU14740
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Genomic context

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Sequence:
NC_000964.3 (1544603..1544896)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene extracellular neutral metalloprotease Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene RNA polymerase ECF-type sigma factor Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Anti-σ factor YlaD regulates transcriptional activity of σ factor YlaC and sporulation via manganese-dependent redox-sensing molecular switch in Bacillus subtilis. Kwak MK, et al. Biochem J, 2018 Jul 5. PMID 29760236
  2. Transcriptional analysis of the ylaABCD operon of Bacillus subtilis encoding a sigma factor of extracytoplasmic function family. Matsumoto T, et al. Genes Genet Syst, 2005 Dec. PMID 16501307
  3. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  4. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  5. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. data demonstrated that YlaD senses redox changes and elicits increase in Mn ion concentrations and that, in turn, YlaD-mediated transcriptional activity of YlaC regulates sporulation initiation under oxidative stress and Mn-substituted conditions by regulating clpP gene transcripts.
    Title: Anti-σ factor YlaD regulates transcriptional activity of σ factor YlaC and sporulation via manganese-dependent redox-sensing molecular switch in Bacillus subtilis.
  2. YlaD seems to function as an anti-YlaC factor, because disruption of ylaD results in an enhanced transcription of the whole YlaABCD operon.
    Title: Transcriptional analysis of the ylaABCD operon of Bacillus subtilis encoding a sigma factor of extracytoplasmic function family.
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General gene information

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Homology

General protein information

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Preferred Names
anti-SigP(YlaC) sigma factor
NP_389357.1
  • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 16501307, 16728958, 20817771; Product type r: regulator

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_389357.1 anti-SigP(YlaC) sigma factor [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_389357.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0D1L9G7
    Conserved Domains (1) summary
    COG5660
    Location:1 → 97
    YlaC; Predicted anti-sigma-YlaC factor YlaD, contains Zn-finger domain [Signal transduction mechanisms]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O07628.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases