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LOC9326538 nuclear transcription factor Y subunit B-9 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9326538, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9326538
Gene description
nuclear transcription factor Y subunit B-9
Locus tag
ARALYDRAFT_889672
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9326538 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302555.1 (9547414..9550622)

NW_003302555.1Genomic Context describing neighboring genes Neighboring gene probable E3 ubiquitin-protein ligase ATL44 Neighboring gene uncharacterized LOC9326536 Neighboring gene nuclear transcription factor Y subunit B-9 Neighboring gene phosphatidylinositol 4-phosphate 5-kinase 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302555 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCAAT-binding factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear transcription factor Y subunit B-9
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302555.1 Reference v.1.0 Primary Assembly

    Range
    9547414..9550622
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021014144.1 → XP_020869803.1  nuclear transcription factor Y subunit B-9 isoform X2

    UniProtKB/TrEMBL
    D7KKW7
    Conserved Domains (1) summary
    pfam00808
    Location:33 → 96
    CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone

  2. XM_002890430.2 → XP_002890476.1  nuclear transcription factor Y subunit B-9 isoform X2

    See identical proteins and their annotated locations for XP_002890476.1

    UniProtKB/TrEMBL
    D7KKW7
    Conserved Domains (1) summary
    pfam00808
    Location:33 → 96
    CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone

  3. XM_021014143.1 → XP_020869802.1  nuclear transcription factor Y subunit B-9 isoform X1

    Conserved Domains (1) summary
    pfam00808
    Location:49 → 112
    CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Nucleotide Protein
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