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LOC9325231 agamous-like MADS-box protein AGL66 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9325231, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9325231
Gene description
agamous-like MADS-box protein AGL66
Locus tag
ARALYDRAFT_476959
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9325231 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302554.1 (17887913..17891775)

NW_003302554.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9323775 Neighboring gene 60S ribosomal protein L30-2 Neighboring gene uncharacterized LOC110230637 Neighboring gene putative mediator of RNA polymerase II transcription subunit 26 Neighboring gene agamous-like MADS-box protein AGL66

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302554 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agamous-like MADS-box protein AGL66
Names
transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302554.1 Reference v.1.0 Primary Assembly

    Range
    17887913..17891775
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021034068.1 → XP_020889727.1  agamous-like MADS-box protein AGL66

    UniProtKB/TrEMBL
    D7KV59, D7KXQ3
    Conserved Domains (2) summary
    cl00109
    Location:2 → 75
    MADS; MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ ...
    cl26127
    Location:147 → 228
    PRK12267; methionyl-tRNA synthetase; Reviewed
Nucleotide Protein
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