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LOC9325185 agamous-like MADS-box protein AGL27 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9325185, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9325185
Gene description
agamous-like MADS-box protein AGL27
Locus tag
ARALYDRAFT_476870
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302554.1 (17487085..17490954)

NW_003302554.1Genomic Context describing neighboring genes Neighboring gene putative defensin-like protein 280 Neighboring gene putative defensin-like protein 280 Neighboring gene psbP domain-containing protein 4, chloroplastic Neighboring gene peroxidase 13

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302554 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agamous-like MADS-box protein AGL27

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302554.1 Reference v.1.0 Primary Assembly

    Range
    17487085..17490954
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021034681.1 → XP_020890340.1  agamous-like MADS-box protein AGL27 isoform X1

    Conserved Domains (2) summary
    pfam01486
    Location:114 → 163
    K-box; K-box region
    cl00109
    Location:2 → 71
    MADS; MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type ...

  2. XM_002887622.2 → XP_002887668.1  agamous-like MADS-box protein AGL27 isoform X2

    See identical proteins and their annotated locations for XP_002887668.1

    UniProtKB/TrEMBL
    D7KU02
    Conserved Domains (2) summary
    pfam01486
    Location:110 → 159
    K-box; K-box region
    cl00109
    Location:2 → 61
    MADS; MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ ...
Nucleotide Protein
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