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LOC9323927 agamous-like MADS-box protein AGL66 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9323927, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9323927
Gene description
agamous-like MADS-box protein AGL66
Locus tag
ARALYDRAFT_477299
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9323927 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302554.1 (19315445..19318849, complement)

NW_003302554.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110230676 Neighboring gene protein PAF1 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302554 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agamous-like MADS-box protein AGL66
Names
transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302554.1 Reference v.1.0 Primary Assembly

    Range
    19315445..19318849 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021010112.1 → XP_020865771.1  agamous-like MADS-box protein AGL66

    Conserved Domains (2) summary
    cl00109
    Location:68 → 89
    MADS; MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type ...
    cl26127
    Location:203 → 284
    PRK12267; methionyl-tRNA synthetase; Reviewed
Nucleotide Protein
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