U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC9323644 zinc-finger homeodomain protein 5 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9323644, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC9323644
Gene description
zinc-finger homeodomain protein 5
Locus tag
ARALYDRAFT_895391
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC9323644 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302554.1 (16613518..16615277)

NW_003302554.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110230631 Neighboring gene uncharacterized LOC9325080 Neighboring gene protein RADIALIS-like 6 Neighboring gene nucleolar and coiled-body phosphoprotein 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_003302554 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of developmental process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
zinc-finger homeodomain protein 5

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302554.1 Reference v.1.0 Primary Assembly

    Range
    16613518..16615277
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002887534.2 → XP_002887580.1  zinc-finger homeodomain protein 5

    See identical proteins and their annotated locations for XP_002887580.1

    UniProtKB/TrEMBL
    D7KSL9
    Conserved Domains (2) summary
    TIGR01565
    Location:241 → 297
    homeo_ZF_HD; homeobox domain, ZF-HD class
    pfam04770
    Location:74 → 128
    ZF-HD_dimer; ZF-HD protein dimerization region
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials