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LOC9323598 DNAJ protein JJJ1 homolog [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9323598, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9323598
Gene description
DNAJ protein JJJ1 homolog
Locus tag
ARALYDRAFT_339622
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9323598 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302554.1 (16218450..16220880)

NW_003302554.1Genomic Context describing neighboring genes Neighboring gene glycine-rich RNA-binding protein 5, mitochondrial Neighboring gene mitochondrial substrate carrier family protein E Neighboring gene probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial Neighboring gene 60S ribosomal protein L35a-3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302554 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNAJ protein JJJ1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302554.1 Reference v.1.0 Primary Assembly

    Range
    16218450..16220880
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002887488.2 → XP_002887534.1  DNAJ protein JJJ1 homolog

    See identical proteins and their annotated locations for XP_002887534.1

    UniProtKB/TrEMBL
    D7KS04
    Conserved Domains (6) summary
    PTZ00121
    Location:202 → 603
    PTZ00121; MAEBL; Provisional
    COG5112
    Location:311 → 382
    UFD2; U1-like Zn-finger-containing protein [General function prediction only]
    COG5269
    Location:12 → 241
    ZUO1; Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
    sd00020
    Location:314 → 336
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00226
    Location:11 → 78
    DnaJ; DnaJ domain
    pfam12171
    Location:312 → 337
    zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
Nucleotide Protein
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