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LOC9319049 protein tesmin/TSO1-like CXC 8 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9319049, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9319049
Gene description
protein tesmin/TSO1-like CXC 8
Locus tag
ARALYDRAFT_672486
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9319049 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302553.1 (6774780..6777302, complement)

NW_003302553.1Genomic Context describing neighboring genes Neighboring gene dynein light chain 1, cytoplasmic Neighboring gene rop guanine nucleotide exchange factor 13 Neighboring gene photosystem I reaction center subunit VI-1, chloroplastic Neighboring gene probable isoaspartyl peptidase/L-asparaginase 2 Neighboring gene malonate--CoA ligase Neighboring gene uncharacterized LOC9319050

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302553 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein tesmin/TSO1-like CXC 8
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302553.1 Reference v.1.0 Primary Assembly

    Range
    6774780..6777302 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021033350.1 → XP_020889009.1  protein tesmin/TSO1-like CXC 8 isoform X3

    Conserved Domains (1) summary
    pfam03638
    Location:145 → 180
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

  2. XM_021033349.1 → XP_020889008.1  protein tesmin/TSO1-like CXC 8 isoform X1

    Conserved Domains (1) summary
    pfam03638
    Location:145 → 180
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

  3. XM_002885080.2 → XP_002885126.1  protein tesmin/TSO1-like CXC 8 isoform X2

    See identical proteins and their annotated locations for XP_002885126.1

    UniProtKB/TrEMBL
    D7L5L0
    Conserved Domains (1) summary
    pfam03638
    Location:145 → 180
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain
Nucleotide Protein
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