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LOC9315897 transcription factor MYB25 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9315897, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9315897
Gene description
transcription factor MYB25
Locus tag
ARALYDRAFT_669853
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9315897 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302552.1 (19391436..19393244, complement)

NW_003302552.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110229313 Neighboring gene uncharacterized LOC9315896 Neighboring gene uncharacterized LOC110229351 Neighboring gene proline transporter 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302552 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor MYB25
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302552.1 Reference v.1.0 Primary Assembly

    Range
    19391436..19393244 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021030187.1 → XP_020885846.1  transcription factor MYB25 isoform X2

    Conserved Domains (1) summary
    cl28544
    Location:53 → 143
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

  2. XM_002881636.2 → XP_002881682.1  transcription factor MYB25 isoform X1

    See identical proteins and their annotated locations for XP_002881682.1

    UniProtKB/TrEMBL
    D7LDT7
    Conserved Domains (2) summary
    smart00717
    Location:53 → 101
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam00249
    Location:53 → 99
    Myb_DNA-binding; Myb-like DNA-binding domain
Nucleotide Protein
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