U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC9315391 probable transcription factor PosF21 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9315391, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC9315391
Gene description
probable transcription factor PosF21
Locus tag
ARALYDRAFT_482066
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC9315391 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302552.1 (14850836..14853359)

NW_003302552.1Genomic Context describing neighboring genes Neighboring gene hydroxyacylglutathione hydrolase 2, mitochondrial Neighboring gene delta-9 acyl-lipid desaturase 2 Neighboring gene B-box zinc finger protein 25 Neighboring gene probable fructokinase-1 Neighboring gene pentatricopeptide repeat-containing protein At2g31400, chloroplastic

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_003302552 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable transcription factor PosF21

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302552.1 Reference v.1.0 Primary Assembly

    Range
    14850836..14853359
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021029240.1 → XP_020884899.1  probable transcription factor PosF21

    UniProtKB/TrEMBL
    D7LDK3
    Conserved Domains (2) summary
    cd14703
    Location:202 → 251
    bZIP_plant_RF2; Basic leucine zipper (bZIP) domain of Plant RF2-like transcription factors: a DNA-binding and dimerization domain
    pfam08614
    Location:226 → 290
    ATG16; Autophagy protein 16 (ATG16)

  2. XM_021029242.1 → XP_020884901.1  probable transcription factor PosF21

    UniProtKB/TrEMBL
    D7LDK3
    Conserved Domains (2) summary
    cd14703
    Location:202 → 251
    bZIP_plant_RF2; Basic leucine zipper (bZIP) domain of Plant RF2-like transcription factors: a DNA-binding and dimerization domain
    pfam08614
    Location:226 → 290
    ATG16; Autophagy protein 16 (ATG16)

  3. XM_021029243.1 → XP_020884902.1  probable transcription factor PosF21

    UniProtKB/TrEMBL
    D7LDK3
    Conserved Domains (2) summary
    cd14703
    Location:202 → 251
    bZIP_plant_RF2; Basic leucine zipper (bZIP) domain of Plant RF2-like transcription factors: a DNA-binding and dimerization domain
    pfam08614
    Location:226 → 290
    ATG16; Autophagy protein 16 (ATG16)

  4. XM_021029241.1 → XP_020884900.1  probable transcription factor PosF21

    UniProtKB/TrEMBL
    D7LDK3
    Conserved Domains (2) summary
    cd14703
    Location:202 → 251
    bZIP_plant_RF2; Basic leucine zipper (bZIP) domain of Plant RF2-like transcription factors: a DNA-binding and dimerization domain
    pfam08614
    Location:226 → 290
    ATG16; Autophagy protein 16 (ATG16)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials