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LOC9314347 protein NLP9 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9314347, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9314347
Gene description
protein NLP9
Locus tag
ARALYDRAFT_666845
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9314347 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302551.1 (19397965..19403650)

NW_003302551.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110228021 Neighboring gene small G protein signaling modulator 1 Neighboring gene DNA-directed RNA polymerases II, IV and V subunit 8B Neighboring gene 2-(3-amino-3-carboxypropyl)histidine synthase subunit 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302551 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: protein NLP9
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302551.1 Reference v.1.0 Primary Assembly

    Range
    19397965..19403650
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021026556.1 → XP_020882215.1  LOW QUALITY PROTEIN: protein NLP9

    UniProtKB/TrEMBL
    D7LWE8
    Conserved Domains (2) summary
    cd06407
    Location:815 → 896
    PB1_NLP; A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which ...
    pfam02042
    Location:559 → 607
    RWP-RK; RWP-RK domain
Nucleotide Protein
Heading Accession and Version

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