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LOC9312322 protein SHI RELATED SEQUENCE 6 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9312322, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9312322
Gene description
protein SHI RELATED SEQUENCE 6
Locus tag
ARALYDRAFT_485843
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9312322 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302551.1 (17012531..17013713, complement)

NW_003302551.1Genomic Context describing neighboring genes Neighboring gene aspartyl protease AED3 Neighboring gene uncharacterized LOC9314045 Neighboring gene endochitinase EP3 Neighboring gene beta-galactosidase Neighboring gene protein NRT1/ PTR FAMILY 5.4 Neighboring gene F-box protein At3g54460

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302551 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SHI RELATED SEQUENCE 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302551.1 Reference v.1.0 Primary Assembly

    Range
    17012531..17013713 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021023962.1 → XP_020879621.1  protein SHI RELATED SEQUENCE 6

    UniProtKB/TrEMBL
    D7LUT8
    Conserved Domains (1) summary
    pfam05142
    Location:37 → 173
    DUF702; Domain of unknown function (DUF702)
Nucleotide Protein
Heading Accession and Version

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