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LOC9310977 homeobox protein LUMINIDEPENDENS [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9310977, updated on 10-Oct-2024

Summary

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Gene symbol
LOC9310977
Gene description
homeobox protein LUMINIDEPENDENS
Locus tag
ARALYDRAFT_911958
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
LD
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Genomic context

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See LOC9310977 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302550.1 (23623131..23628074)

NW_003302550.1Genomic Context describing neighboring genes Neighboring gene NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial Neighboring gene cullin-1 Neighboring gene uncharacterized LOC110227838 Neighboring gene glutamic acid-rich protein-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302550 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in vegetative to reproductive phase transition of meristem IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein LUMINIDEPENDENS

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302550.1 Reference v.1.0 Primary Assembly

    Range
    23623131..23628074
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002872784.2 → XP_002872830.1  homeobox protein LUMINIDEPENDENS

    See identical proteins and their annotated locations for XP_002872830.1

    UniProtKB/TrEMBL
    A0A0N6WLV5, A0A0N6WLV8, A0A0N7DSZ7, A0A0N7DT00, A0A0N7DT03, A0A0N7DT08, A0A0N7DT09, A0A0N7DT14, A0A0N7DT15, A0A0N7DT16, A0A0N7DT17, A0A0N7DT21, A0A0N7DT22, A0A0N7DT25, A0A0N7DT27, A0A0N7DT29, A0A0N7DTT4, A0A0N7DTU2, A0A0N7DUK2, A0A0N7DUL0, A0A0N7DUL8, A0A0N7DUQ9, A0A0N7DUR8, A0A0N7DUT4, A0A0N7DUU4, D7M3G5
    Conserved Domains (4) summary
    smart00389
    Location:65 → 121
    HOX; Homeodomain
    TIGR01385
    Location:245 → 477
    TFSII; transcription elongation factor S-II
    pfam12287
    Location:643 → 945
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    cl00146
    Location:247 → 312
    TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Nucleotide Protein
Heading Accession and Version

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