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LOC9307238 trihelix transcription factor ASIL2 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9307238, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9307238
Gene description
trihelix transcription factor ASIL2
Locus tag
ARALYDRAFT_487349
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9307238 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302550.1 (2016013..2017683, complement)

NW_003302550.1Genomic Context describing neighboring genes Neighboring gene putative RING-H2 finger protein ATL35 Neighboring gene small RNA degrading nuclease 2 Neighboring gene anaphase-promoting complex subunit 1 Neighboring gene uncharacterized LOC9307240

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302550 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trihelix transcription factor ASIL2
Names
transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302550.1 Reference v.1.0 Primary Assembly

    Range
    2016013..2017683 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002873166.2 → XP_002873212.1  trihelix transcription factor ASIL2

    See identical proteins and their annotated locations for XP_002873212.1

    UniProtKB/TrEMBL
    D7LYY3
    Conserved Domains (2) summary
    pfam13837
    Location:20 → 103
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    cl19107
    Location:191 → 235
    SPFH_like; core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily
Nucleotide Protein
Heading Accession and Version

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