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LOC9306091 heat stress transcription factor C-1 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9306091, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9306091
Gene description
heat stress transcription factor C-1
Locus tag
ARALYDRAFT_658233
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9306091 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302549.1 (10574914..10576191, complement)

NW_003302549.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110226074 Neighboring gene uncharacterized LOC110226204 Neighboring gene uncharacterized protein At4g04775-like Neighboring gene uncharacterized LOC9306092 Neighboring gene pentatricopeptide repeat-containing protein At4g18840 Neighboring gene transcription repressor OFP5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302549 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heat stress transcription factor C-1
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302549.1 Reference v.1.0 Primary Assembly

    Range
    10574914..10576191 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002869974.2 → XP_002870020.1  heat stress transcription factor C-1

    See identical proteins and their annotated locations for XP_002870020.1

    UniProtKB/TrEMBL
    D7M9E4
    Conserved Domains (1) summary
    smart00415
    Location:13 → 103
    HSF; heat shock factor
Nucleotide Protein
Heading Accession and Version

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