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LOC9304418 protein PHR1-LIKE 3 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9304418, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9304418
Gene description
protein PHR1-LIKE 3
Locus tag
ARALYDRAFT_658937
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9304418 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302549.1 (14794363..14796674)

NW_003302549.1Genomic Context describing neighboring genes Neighboring gene putative FBD-associated F-box protein At5g56560 Neighboring gene pentatricopeptide repeat-containing protein At4g13650 Neighboring gene uncharacterized LOC9304419 Neighboring gene uncharacterized LOC9306440

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302549 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein PHR1-LIKE 3
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302549.1 Reference v.1.0 Primary Assembly

    Range
    14794363..14796674
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002868300.2 → XP_002868346.1  protein PHR1-LIKE 3 isoform X1

    See identical proteins and their annotated locations for XP_002868346.1

    UniProtKB/TrEMBL
    D7MHD5
    Conserved Domains (2) summary
    TIGR01557
    Location:37 → 93
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam14379
    Location:134 → 182
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

  2. XM_021019710.1 → XP_020875369.1  protein PHR1-LIKE 3 isoform X2

    Conserved Domains (3) summary
    TIGR01557
    Location:37 → 93
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam14379
    Location:134 → 179
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
    cl25732
    Location:79 → 207
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

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