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pscD type III export protein PscD [ Pseudomonas aeruginosa PAO1 ]

Gene ID: 877924, updated on 24-Aug-2024

Summary

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Gene symbol
pscD
Gene description
type III export protein PscD
Locus tag
PA1717
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pseudomonas aeruginosa PAO1 (strain: PAO1)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
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Genomic context

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Sequence:
NC_002516.2 (1861297..1862595)

NC_002516.2Genomic Context describing neighboring genes Neighboring gene type III export apparatus protein Neighboring gene type III secretion outer membrane protein PscC Neighboring gene type III export protein PscE Neighboring gene type III export protein PscF Neighboring gene type III export protein PscG Neighboring gene type III export protein PscH

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002516.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Exoenzyme S of Pseudomonas aeruginosa is secreted by a type III pathway. Yahr TL, et al. Mol Microbiol, 1996 Dec. PMID 8971719
  2. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article
  3. Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. Cirz RT, et al. J Bacteriol, 2006 Oct. PMID 17015649, Free PMC Article
  4. Cystic fibrosis sputum supports growth and cues key aspects of Pseudomonas aeruginosa physiology. Palmer KL, et al. J Bacteriol, 2005 Aug. PMID 16030221, Free PMC Article
  5. A cystic fibrosis epidemic strain of Pseudomonas aeruginosa displays enhanced virulence and antimicrobial resistance. Salunkhe P, et al. J Bacteriol, 2005 Jul. PMID 15995206, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by PseudoCAP

Process Evidence Code Pubs
acts_upstream_of_or_within protein secretion by the type III secretion system IGC
Inferred from Genomic Context
more info
 PubMed 

General protein information

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Preferred Names
type III export protein PscD
NP_250408.1
  • Product name confidence: class 1 (Function experimentally demonstrated in P. aeruginosa)

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002516.2 Reference assembly

    Range
    1861297..1862595
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_250408.1 type III export protein PscD [Pseudomonas aeruginosa PAO1]

    See identical proteins and their annotated locations for NP_250408.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    P95432
    Conserved Domains (2) summary
    cl27782
    Location:164 → 415
    Yop-YscD_ppl; Inner membrane component of T3SS, periplasmic domain
    pfam16697
    Location:6 → 99
    Yop-YscD_cpl; Inner membrane component of T3SS, cytoplasmic domain
Nucleotide Protein
Heading Accession and Version

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