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Cbr-lst-2 Protein CBR-LST-2 [ Caenorhabditis briggsae ]

Gene ID: 8586531, updated on 6-Jun-2024

Summary

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Gene symbol
Cbr-lst-2
Gene description
Protein CBR-LST-2
Locus tag
CBG_14460
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See Cbr-lst-2 in Genome Data Viewer
Location:
chromosome: X
Exon count:
9
Sequence:
Chromosome: X; NC_013491.2 (9675206..9678982, complement)

Chromosome X - NC_013491.2Genomic Context describing neighboring genes Neighboring gene Protein CBG27688 Neighboring gene Protein CBG27689 Neighboring gene Protein CBR-DPY-23 Neighboring gene tRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013491.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in early endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein CBR-LST-2
XP_002644535.1
  • C. briggsae CBR-LST-2 protein; contains similarity to Pfam domain PF01363 FYVE zinc finger contains similarity to Interpro domain IPR000306 (Zinc finger, FYVE-type);
    Predicted

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013491.2 Reference assembly

    Range
    9675206..9678982 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002644489.1 → XP_002644535.1  Protein CBR-LST-2 [Caenorhabditis briggsae]

    See identical proteins and their annotated locations for XP_002644535.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A8XJZ8
    UniProtKB/TrEMBL
    A0AAE8ZQZ3, A0AAE9CUX8
    Conserved Domains (2) summary
    cd15731
    Location:550 → 614
    FYVE_LST2; FYVE domain found in lateral signaling target protein 2 homolog (Lst2) and similar proteins
    pfam05764
    Location:367 → 476
    YL1; YL1 nuclear protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A8XJZ8.1

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