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RIM13 Rim13p [ Saccharomyces cerevisiae S288C ]

Gene ID: 855186, updated on 3-Nov-2024

Summary

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Official Symbol
RIM13
Official Full Name
Rim13p
Primary source
SGD:S000004763
Locus tag
YMR154C
See related
AllianceGenome:SGD:S000004763; FungiDB:YMR154C; VEuPathDB:YMR154C
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Also known as
CPL1
Summary
Enables cysteine-type endopeptidase activity. Involved in protein processing. Orthologous to human CAPN7 (calpain 7). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See RIM13 in Genome Data Viewer
Location:
chromosome: XIII
Exon count:
1
Sequence:
Chromosome: XIII; NC_001145.3 (565999..568182, complement)

Chromosome XIII - NC_001145.3Genomic Context describing neighboring genes Neighboring gene Yim1p Neighboring gene FG-nucleoporin NUP53 Neighboring gene uncharacterized protein Neighboring gene polynucleotide 3'-phosphatase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001145.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The protease activity of a calpain-like cysteine protease in Saccharomyces cerevisiae is required for alkaline adaptation and sporulation. Futai E, et al. Mol Gen Genet, 1999 Jan. PMID 9928935
  2. Rapid turnover of transcription factor Rim101 confirms a flexible adaptation mechanism against environmental stress in Saccharomyces cerevisiae. Obara K, et al. Genes Cells, 2020 Oct. PMID 32741024
  3. cis- and trans-acting localization determinants of pH response regulator Rim13 in Saccharomyces cerevisiae. Subramanian S, et al. Eukaryot Cell, 2012 Oct. PMID 22865500, Free PMC Article
  4. Alkaline response genes of Saccharomyces cerevisiae and their relationship to the RIM101 pathway. Lamb TM, et al. J Biol Chem, 2001 Jan 19. PMID 11050096
  5. The cell death protease Kex1p is essential for hypochlorite-induced apoptosis in yeast. Carmona-Gutierrez D, et al. Cell Cycle, 2013 Jun 1. PMID 23656787, Free PMC Article

See all (77) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Rim13 is associated with the Rim20-ESCRT complex.
    Title: cis- and trans-acting localization determinants of pH response regulator Rim13 in Saccharomyces cerevisiae.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables cysteine-type endopeptidase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables cysteine-type endopeptidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables cysteine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein processing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in proteolysis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
Rim13p
NP_013875.1
  • Calpain-like cysteine protease; involved in proteolytic activation of Rim101p in response to alkaline pH; localizes to punctate structures in alkaline conditions and in vps4 mutant; has similarity to A. nidulans palB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001145.3 Reference assembly

    Range
    565999..568182 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001182657.1 → NP_013875.1  TPA: Rim13p [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_013875.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D6VZX5, Q03792
    UniProtKB/TrEMBL
    A6ZML2, G2WKK5
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q03792.1

Gene LinkOut

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