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uncharacterized protein [ Saccharomyces cerevisiae S288C ]

Gene ID: 855010, updated on 28-Oct-2024

Summary

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Official Full Name
uncharacterized protein
Primary source
SGD:S000004462
Locus tag
YML003W
See related
AllianceGenome:SGD:S000004462; FungiDB:YML003W; VEuPathDB:YML003W
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Also known as
VRL1
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Genomic context

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Location:
chromosome: XIII
Exon count:
1
Sequence:
Chromosome: XIII; NC_001145.3 (263483..264355)

Chromosome XIII - NC_001145.3Genomic Context describing neighboring genes Neighboring gene tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase Neighboring gene lactoylglutathione lyase GLO1 Neighboring gene Vrl1p Neighboring gene Rab family GTPase YPT7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001145.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Vrl1 relies on its VPS9-domain to play a role in autophagy in Saccharomyces cerevisiae. Li W, et al. Cell Biol Int, 2019 Aug. PMID 31038239
  2. Rab5-family guanine nucleotide exchange factors bind retromer and promote its recruitment to endosomes. Bean BD, et al. Mol Biol Cell, 2015 Mar 15. PMID 25609093, Free PMC Article
  3. Yeast Nst1 is a novel component of P-bodies and is a specific suppressor of proteasome base assembly defects. Cheng CL, et al. Mol Biol Cell, 2021 Oct 1. PMID 34347506, Free PMC Article
  4. The nucleotide sequence of Saccharomyces cerevisiae chromosome XIII. Bowman S, et al. Nature, 1997 May 29. PMID 9169872
  5. A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast. Carey SB, et al. G3 (Bethesda), 2023 Jan 12. PMID 36409020, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein
NP_013711.1
  • Truncated 5' end of YML002W; in many strains, YML002W is continuous with YML003W, and is predicted to encode a single protein of 1090 aa with a full-length VPS9 domain; in strains S288C, W303, and CEN.PK, a single thymine residue is deleted near the 3' end of YML003W at ChrXIII:264337, causing a frameshift and premature stop codon, truncating YML003W

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001145.3 Reference assembly

    Range
    263483..264355
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001182358.1 → NP_013711.1  TPA: uncharacterized protein YML003W [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_013711.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D6VZH2, P0CF16, Q03665, Q04257, Q04263, Q6B2L5, Q6WV03
    UniProtKB/TrEMBL
    N1NYK5
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0CF16.1

Gene LinkOut

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