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SGM1 Sgm1p [ Saccharomyces cerevisiae S288C ]

Gene ID: 853598, updated on 2-Nov-2024

Summary

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Official Symbol
SGM1
Official Full Name
Sgm1p
Primary source
SGD:S000003895
Locus tag
YJR134C
See related
AllianceGenome:SGD:S000003895; FungiDB:YJR134C; VEuPathDB:YJR134C
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Located in Golgi apparatus. Orthologous to human TMF1 (TATA element modulatory factor 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See SGM1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
1
Sequence:
Chromosome: X; NC_001142.9 (673729..675852, complement)

Chromosome X - NC_001142.9Genomic Context describing neighboring genes Neighboring gene Nmd5p Neighboring gene xanthine phosphoribosyltransferase Neighboring gene Mcm22p Neighboring gene protein transporter TIM8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001142.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TMF is a golgin that binds Rab6 and influences Golgi morphology. Fridmann-Sirkis Y, et al. BMC Cell Biol, 2004 May 5. PMID 15128430, Free PMC Article
  2. Affinity purification of Ypt6 effectors and identification of TMF/ARA160 as a Rab6 interactor. Siniossoglou S. Methods Enzymol, 2005. PMID 16473623
  3. Conserved juxtamembrane domains in the yeast golgin Coy1 drive assembly of a megadalton-sized complex and mediate binding to tethering and SNARE proteins. Anderson NS, et al. J Biol Chem, 2019 Jun 21. PMID 31073031, Free PMC Article
  4. An effector of Ypt6p binds the SNARE Tlg1p and mediates selective fusion of vesicles with late Golgi membranes. Siniossoglou S, et al. EMBO J, 2001 Nov 1. PMID 11689439, Free PMC Article
  5. Nuclear export receptor Xpo1/Crm1 is physically and functionally linked to the spindle pole body in budding yeast. Neuber A, et al. Mol Cell Biol, 2008 Sep. PMID 18573877, Free PMC Article

See all (34) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
is_active_in endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Sgm1p
NP_012668.3
  • hypothetical protein; required for wild-type growth rate on galactose and mannose; localizes to COPI coated vesicles and the Golgi apparatus

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001142.9 Reference assembly

    Range
    673729..675852 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001181792.3 → NP_012668.3  TPA: Sgm1p [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_012668.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D6VWV2, P47166
    UniProtKB/TrEMBL
    A6ZQ89, B3LQL6, B5VLS3, C7GM79, N1P8X6
    Conserved Domains (2) summary
    TIGR02168
    Location:122 → 438
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam12325
    Location:585 → 693
    TMF_TATA_bd; TATA element modulatory factor 1 TATA binding
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P47166.1

Gene LinkOut

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