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SNU71 Snu71p [ Saccharomyces cerevisiae S288C ]

Gene ID: 852896, updated on 18-Sep-2024

Summary

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Official Symbol
SNU71
Official Full Name
Snu71p
Primary source
SGD:S000003245
Locus tag
YGR013W
See related
AllianceGenome:SGD:S000003245; FungiDB:YGR013W; VEuPathDB:YGR013W
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Enables RNA binding activity. Involved in mRNA splicing, via spliceosome. Part of U1 snRNP and U2-type prespliceosome. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See SNU71 in Genome Data Viewer
Location:
chromosome: VII
Exon count:
1
Sequence:
Chromosome: VII; NC_001139.9 (514554..516416)

Chromosome VII - NC_001139.9Genomic Context describing neighboring genes Neighboring gene nicotinamide-nucleotide adenylyltransferase NMA2 Neighboring gene putative cysteine synthase Neighboring gene Msb2p Neighboring gene putative hydrolase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001139.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The FF domains of yeast U1 snRNP protein Prp40 mediate interactions with Luc7 and Snu71. Ester C, et al. BMC Biochem, 2008 Nov 11. PMID 19014439, Free PMC Article
  2. Rapid isolation and single-molecule analysis of ribonucleoproteins from cell lysate by SNAP-SiMPull. Rodgers ML, et al. RNA, 2015 May. PMID 25805862, Free PMC Article
  3. Interaction of yeast eIF4G with spliceosome components: implications in pre-mRNA processing events. Kafasla P, et al. RNA Biol, 2009 Nov-Dec. PMID 19838078, Free PMC Article
  4. A targeted bypass screen identifies Ynl187p, Prp42p, Snu71p, and Cbp80p for stable U1 snRNP/Pre-mRNA interaction. Hage R, et al. Mol Cell Biol, 2009 Jul. PMID 19451230, Free PMC Article
  5. A single SR-like protein, Npl3, promotes pre-mRNA splicing in budding yeast. Kress TL, et al. Mol Cell, 2008 Dec 5. PMID 19061647, Free PMC Article

See all (54) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables RNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in RNA splicing IEA
Inferred from Electronic Annotation
more info
  
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
  
involved_in mRNA splicing, via spliceosome IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IDA
Inferred from Direct Assay
more info
 PubMed 
part_of U2-type prespliceosome IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Snu71p
NP_011527.1
  • Component of U1 snRNP required for mRNA splicing via spliceosome; yeast specific, no metazoan counterpart

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001139.9 Reference assembly

    Range
    514554..516416
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001181142.1 → NP_011527.1  TPA: Snu71p [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_011527.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A6ZV04, D6VUE9, P53207
    UniProtKB/TrEMBL
    B3LIK4, B5VIX2, C7GK82, C8Z8Q7, N1P3S3
    Conserved Domains (1) summary
    smart00311
    Location:547 → 620
    PWI; domain in splicing factors
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P53207.1

Gene LinkOut

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