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RNP1 Rnp1p [ Saccharomyces cerevisiae S288C ]

Gene ID: 850680, updated on 2-Nov-2024

Summary

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Official Symbol
RNP1
Official Full Name
Rnp1p
Primary source
SGD:S000003969
Locus tag
YLL046C
See related
AllianceGenome:SGD:S000003969; FungiDB:YLL046C; VEuPathDB:YLL046C
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Predicted to enable mRNA binding activity. Involved in ribosome biogenesis. Located in cytoplasm. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See RNP1 in Genome Data Viewer
Location:
chromosome: XII
Exon count:
1
Sequence:
Chromosome: XII; NC_001144.5 (46714..47463, complement)

Chromosome XII - NC_001144.5Genomic Context describing neighboring genes Neighboring gene Ldb18p Neighboring gene bile acid-transporting ATPase YBT1 Neighboring gene ribosomal 60S subunit protein L8B Neighboring gene Fps1p

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001144.5

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A protein containing conserved RNA-recognition motifs is associated with ribosomal subunits in Saccharomyces cerevisiae. Ripmaster TL, et al. Nucleic Acids Res, 1993 Jul 11. PMID 8341595, Free PMC Article
  2. RNP1, a new ribonucleoprotein gene of the yeast Saccharomyces cerevisiae. Cusick ME. Nucleic Acids Res, 1994 Mar 11. PMID 8139928, Free PMC Article
  3. Selective ploidy ablation, a high-throughput plasmid transfer protocol, identifies new genes affecting topoisomerase I-induced DNA damage. Reid RJ, et al. Genome Res, 2011 Mar. PMID 21173034, Free PMC Article
  4. Srs2 overexpression reveals a helicase-independent role at replication forks that requires diverse cell functions. León Ortiz AM, et al. DNA Repair (Amst), 2011 May 5. PMID 21459050, Free PMC Article
  5. The nucleotide sequence of Saccharomyces cerevisiae chromosome XII. Johnston M, et al. Nature, 1997 May 29. PMID 9169871, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in ribosome biogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of ribonucleoprotein complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Rnp1p
NP_013054.1
  • Ribonucleoprotein that contains two RNA recognition motifs (RRM); RNP1 has a paralog, SBP1, that arose from the whole genome duplication

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001144.5 Reference assembly

    Range
    46714..47463 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001181866.1 → NP_013054.1  TPA: Rnp1p [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_013054.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D6VXW1, P32385
    UniProtKB/TrEMBL
    A7A0L3, B3LTC9, B5VMQ4, C7GNE8, C8ZCS8, G2WIF2, N1NY51
    Conserved Domains (2) summary
    smart00360
    Location:36 → 109
    RRM; RNA recognition motif
    COG0724
    Location:22 → 224
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P32385.2

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