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sec34-like family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843677, updated on 18-Sep-2024

Summary

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Official Full Name
sec34-like family protein
Primary source
TAIR:AT1G73430
Locus tag
AT1G73430
See related
Araport:AT1G73430
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T9L24.37; T9L24_37
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Genomic context

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Location:
chromosome: 1
Exon count:
25
Sequence:
Chromosome: 1; NC_003070.9 (27603655..27611120)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene myb domain protein 54 Neighboring gene calmodulin-like protein Neighboring gene ncRNA Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Syntaxin of plants31 (SYP31) and SYP32 is essential for Golgi morphology maintenance and pollen development. Rui Q, et al. Plant Physiol, 2021 May 27. PMID 33576796, Free PMC Article
  2. Arabidopsis COG Complex Subunits COG3 and COG8 Modulate Golgi Morphology, Vesicle Trafficking Homeostasis and Are Essential for Pollen Tube Growth. Tan X, et al. PLoS Genet, 2016 Jul. PMID 27448097, Free PMC Article
  3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001124123.2
NM_106002.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein homodimerization activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within Golgi organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within Golgi vesicle transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within pollen tube growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus ISM
Inferred from Sequence Model
more info
  
part_of Golgi transport complex IPI
Inferred from Physical Interaction
more info
 PubMed 
located_in cis-Golgi network IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
sec34-like family protein
NP_001117595.1
  • sec34-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: chloroplast, cis-Golgi network, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec34-like protein (InterPro:IPR007265); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_177485.2
  • sec34-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: chloroplast, membrane, cis-Golgi network; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec34-like protein (InterPro:IPR007265); Has 353 Blast hits to 340 proteins in 172 species: Archae - 0; Bacteria - 4; Metazoa - 117; Fungi - 139; Plants - 43; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    27603655..27611120
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106002.4 → NP_177485.2  sec34-like family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177485.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4HQ84, Q8L744, Q9FX37
    UniProtKB/TrEMBL
    A0A178WAK0, A0A654EQ44
    Conserved Domains (1) summary
    pfam04136
    Location:116 → 260
    Sec34; Sec34-like family

  2. NM_001124123.2 → NP_001117595.1  sec34-like family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001117595.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4HQ84, Q8L744, Q9FX37
    UniProtKB/TrEMBL
    A0A178WAK0, A0A654EQ44
    Conserved Domains (1) summary
    pfam04136
    Location:116 → 260
    Sec34; Sec34-like family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4HQ84.1

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