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Caleosin-related family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843405, updated on 18-Sep-2024

Summary

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Official Full Name
Caleosin-related family protein
Primary source
TAIR:AT1G70680
Locus tag
AT1G70680
See related
Araport:AT1G70680
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F5A18.14; F5A18_14
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Genomic context

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Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (26647205..26648737)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Ran BP2/NZF zinc finger-like superfamily protein Neighboring gene MMS ZWEI homologue 2 Neighboring gene Caleosin-related family protein Neighboring gene Receptor-like protein kinase-related family protein Neighboring gene TIFY domain/Divergent CCT motif family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001334476.1
NM_105736.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables plant seed peroxygenase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Caleosin-related family protein
NP_564996.1
  • Caleosin-related family protein; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: Caleosin-related family protein (TAIR:AT1G70670.1); Has 342 Blast hits to 337 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 58; Plants - 281; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    26647205..26648737
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105736.2 → NP_564996.1  Caleosin-related family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564996.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WQP7, Q8L911, Q9CAB8
    UniProtKB/TrEMBL
    A0A178WD81
    Conserved Domains (1) summary
    pfam05042
    Location:15 → 183
    Caleosin; Caleosin related protein

  2. NM_001334476.1 → NP_001320679.1  Caleosin-related family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WD81, A0A1P8ANL6
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9CAB8.1

Gene LinkOut

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