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Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843307, updated on 18-Sep-2024

Summary

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Official Full Name
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein
Primary source
TAIR:AT1G69710
Locus tag
AT1G69710
See related
Araport:AT1G69710
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T6C23.9; T6C23_9
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Genomic context

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Location:
chromosome: 1
Exon count:
9
Sequence:
Chromosome: 1; NC_003070.9 (26222004..26226664)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene TCP family transcription factor Neighboring gene HVA22 homologue C Neighboring gene heme oxygenase 3 Neighboring gene Wall-associated kinase family protein Neighboring gene Aldolase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_105639.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein
NP_177129.2
  • Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; FUNCTIONS IN: chromatin binding, zinc ion binding, Ran GTPase binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, FYVE-type (InterPro:IPR000306), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-related (InterPro:IPR017455), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Pleckstrin homology-type (InterPro:IPR011993), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT5G19420.1); Has 25088 Blast hits to 10396 proteins in 690 species: Archae - 87; Bacteria - 2712; Metazoa - 10178; Fungi - 1575; Plants - 3087; Viruses - 5; Other Eukaryotes - 7444 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    26222004..26226664
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001334419.1 → NP_001322526.1  Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WFE0, Q9C9L3

  2. NM_105639.4 → NP_177129.2  Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177129.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EMM1, F4I287
    Conserved Domains (7) summary
    smart00064
    Location:646 → 714
    FYVE; Protein present in Fab1, YOTB, Vac1, and EEA1
    cd13365
    Location:25 → 135
    PH_PLC_plant-like; Plant-like Phospholipase C (PLC) pleckstrin homology (PH) domain
    pfam00415
    Location:425 → 474
    RCC1; Regulator of chromosome condensation (RCC1) repeat
    pfam08381
    Location:981 → 1035
    BRX; Transcription factor regulating root and shoot growth via Pin3
    pfam13540
    Location:354 → 381
    RCC1_2; Regulator of chromosome condensation (RCC1) repeat
    pfam13713
    Location:896 → 921
    BRX_N; Transcription factor BRX N-terminal domain
    pfam13863
    Location:838 → 936
    DUF4200; Domain of unknown function (DUF4200)
Nucleotide Protein
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