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IDD14 indeterminate(ID)-domain 14 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843141, updated on 18-Sep-2024

Summary

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Official Symbol
IDD14
Official Full Name
indeterminate(ID)-domain 14
Primary source
TAIR:AT1G68130
Locus tag
AT1G68130
See related
Araport:AT1G68130
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtIDD14; IDD14alpha; IDD14beta; indeterminate(ID)-domain 14; T23K23.2; T23K23_2
Summary
Encodes the longer of two splice variants of a transcription factor involved in regulating starch metabolims in response to cold.
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Genomic context

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See IDD14 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (25532008..25534698)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ENTH/ANTH/VHS superfamily protein Neighboring gene BASIC PENTACYSTEINE protein Neighboring gene ncRNA Neighboring gene zinc finger/BTB domain protein, putative (DUF1644)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Two splice variants of the IDD14 transcription factor competitively form nonfunctional heterodimers which may regulate starch metabolism. Seo PJ, et al. Nat Commun, 2011. PMID 21556057
  2. The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport. Cui D, et al. PLoS Genet, 2013. PMID 24039602, Free PMC Article
  3. Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots. Lee JY, et al. Proc Natl Acad Sci U S A, 2006 Apr 11. PMID 16581911, Free PMC Article
  4. A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. Smit ME, et al. Plant Cell, 2020 Feb. PMID 31806676, Free PMC Article
  5. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. both gain- and loss-of-function mutants in IDD14 and its close homologs, IDD15 and IDD16, reveals that these three IDD transcription factors function redundantly and cooperatively in the regulation of multiple aspects of lateral organ morphogenesis
    Title: The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport.
  2. an alternative spliced IDD14 isoform (IDD14beta) has a functional role in starch metabolism under cold conditions.
    Title: Two splice variants of the IDD14 transcription factor competitively form nonfunctional heterodimers which may regulate starch metabolism.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001084322.2
NM_105483.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein heterodimerization activity IPI
Inferred from Physical Interaction
more info
 PubMed 
NOT enables transcription cis-regulatory region binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables transcription cis-regulatory region binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within floral organ morphogenesis IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within gravitropism IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within leaf morphogenesis IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within positive regulation of auxin biosynthetic process IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within regulation of auxin polar transport IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within regulation of starch metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
indeterminate(ID)-domain 14
NP_001077791.1
  • indeterminate(ID)-domain 14 (IDD14); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 16 (TAIR:AT1G25250.1); Has 5936 Blast hits to 4695 proteins in 166 species: Archae - 1; Bacteria - 0; Metazoa - 4962; Fungi - 104; Plants - 720; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).
NP_176980.1
  • indeterminate(ID)-domain 14 (IDD14); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 16 (TAIR:AT1G25250.1); Has 34626 Blast hits to 17187 proteins in 314 species: Archae - 1; Bacteria - 0; Metazoa - 32617; Fungi - 232; Plants - 764; Viruses - 1; Other Eukaryotes - 1011 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    25532008..25534698
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105483.4 → NP_176980.1  indeterminate(ID)-domain 14 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176980.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A8MRJ3, Q9C9X7
    UniProtKB/TrEMBL
    A0A178WFX0, A0A5S9WT40, A0A654EXR8
    Conserved Domains (1) summary
    sd00017
    Location:150 → 169
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. NM_001084322.2 → NP_001077791.1  indeterminate(ID)-domain 14 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077791.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9C9X7
    Conserved Domains (2) summary
    PRK06669
    Location:209 → 281
    fliH; flagellar assembly protein H; Validated
    sd00017
    Location:64 → 83
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C9X7.1

Gene LinkOut

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