U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOX6 PLAT/LH2 domain-containing lipoxygenase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843077, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
LOX6
Official Full Name
PLAT/LH2 domain-containing lipoxygenase family protein
Primary source
TAIR:AT1G67560
Locus tag
AT1G67560
See related
Araport:AT1G67560
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
Arabidopsis thaliana lipoxygenase 6; ATLOX6; F12B7.11; F12B7_11; lipoxygenase 6
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOX6 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Sequence:
Chromosome: 1; NC_003070.9 (25319804..25324581)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ARM repeat superfamily protein Neighboring gene uncharacterized protein Neighboring gene urease Neighboring gene zinc finger CONSTANS-like protein (DUF3537) Neighboring gene Protein kinase superfamily protein Neighboring gene Remorin family protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Lipoxygenase6-dependent oxylipin synthesis in roots is required for abiotic and biotic stress resistance of Arabidopsis. Grebner W, et al. Plant Physiol, 2013 Apr. PMID 23444343, Free PMC Article
  2. Four 13-lipoxygenases contribute to rapid jasmonate synthesis in wounded Arabidopsis thaliana leaves: a role for lipoxygenase 6 in responses to long-distance wound signals. Chauvin A, et al. New Phytol, 2013 Jan. PMID 23171345
  3. Diversity of the enzymatic activity in the lipoxygenase gene family of Arabidopsis thaliana. Bannenberg G, et al. Lipids, 2009 Feb. PMID 18949503
  4. Lipoxygenase-mediated oxidation of polyunsaturated N-acylethanolamines in Arabidopsis. Kilaru A, et al. J Biol Chem, 2011 Apr 29. PMID 21372125, Free PMC Article
  5. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. LOX6-derived oxylipins are important for the responses to abiotic and biotic factors.
    Title: Lipoxygenase6-dependent oxylipin synthesis in roots is required for abiotic and biotic stress resistance of Arabidopsis.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Homology

NM_105423.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables linoleate 13S-lipoxygenase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within jasmonic acid biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in jasmonic acid biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within lipid oxidation IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in oxylipin biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within response to wounding IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to wounding IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane HDA PubMed 

General protein information

Go to the top of the page Help
Preferred Names
PLAT/LH2 domain-containing lipoxygenase family protein
NP_176923.1
  • PLAT/LH2 domain-containing lipoxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding; INVOLVED IN: oxidation reduction, growth; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, iron binding site (InterPro:IPR020833), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, conserved site (InterPro:IPR020834), Lipoxygenase (InterPro:IPR000907), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: PLAT/LH2 domain-containing lipoxygenase family protein (TAIR:AT1G72520.1); Has 1467 Blast hits to 1431 proteins in 179 species: Archae - 0; Bacteria - 76; Metazoa - 533; Fungi - 48; Plants - 781; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    25319804..25324581
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105423.3 → NP_176923.1  PLAT/LH2 domain-containing lipoxygenase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176923.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WLL0, Q56WC0, Q9CAG3
    UniProtKB/TrEMBL
    A0A178W1Z8, A0A5S9WSJ2
    Conserved Domains (1) summary
    PLN02305
    Location:3 → 917
    PLN02305; lipoxygenase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9CAG3.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools