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AT1G54280 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841869, updated on 15-Oct-2023

Summary

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Gene symbol
AT1G54280
Gene description
ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein
Primary source
Araport:AT1G54280
Locus tag
AT1G54280
See related
TAIR:AT1G54280
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F20D21.10; F20D21_10
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Genomic context

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See AT1G54280 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Sequence:
Chromosome: 1; NC_003070.9 (20262468..20267859, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene winged-helix DNA-binding transcription factor family protein Neighboring gene eif4a-2 Neighboring gene ncRNA Neighboring gene Translation initiation factor SUI1 family protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ALA6, a P(4)-type ATPase, Is Involved in Heat Stress Responses in Arabidopsis thaliana. Niu Y, et al. Front Plant Sci, 2017. PMID 29046690, Free PMC Article
  2. Loss of the Arabidopsis thaliana P4-ATPases ALA6 and ALA7 impairs pollen fitness and alters the pollen tube plasma membrane. McDowell SC, et al. Front Plant Sci, 2015. PMID 25954280, Free PMC Article
  3. Divalent metal ions in plant mitochondria and their role in interactions with proteins and oxidative stress-induced damage to respiratory function. Tan YF, et al. Plant Physiol, 2010 Feb. PMID 20018591, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

NM_001333639.1
NM_001333640.1
NM_104306.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables ATPase-coupled intramembrane lipid transporter activity IEA
Inferred from Electronic Annotation
more info
  
enables P-type ion transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding HDA PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within heat acclimation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in phospholipid transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within pollen tube growth IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within regulation of membrane lipid metabolic process IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in endomembrane system IDA
Inferred from Direct Assay
more info
 PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein
NP_001319223.1
  • ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: zinc ion binding, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: metabolic process, phospholipid transport, ATP biosynthetic process; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, phospholipid-translocating, flippase (InterPro:IPR006539), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (TAIR:AT3G13900.1); Has 13355 Blast hits to 11804 proteins in 1599 species: Archae - 121; Bacteria - 4061; Metazoa - 3580; Fungi - 2113; Plants - 951; Viruses - 3; Other Eukaryotes - 2526 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    20262468..20267859 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001333639.1 → NP_001319223.1  ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SLK6
    UniProtKB/TrEMBL
    A0A178W9G7, A0A5S9WLU6
    Conserved Domains (1) summary
    TIGR01652
    Location:59 → 1172
    ATPase-Plipid; phospholipid-translocating P-type ATPase, flippase

  2. NM_001333640.1 → NP_001322413.1  ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SLK6
    UniProtKB/TrEMBL
    A0A178W9G7, A0A5S9WLU6
    Conserved Domains (1) summary
    TIGR01652
    Location:59 → 1172
    ATPase-Plipid; phospholipid-translocating P-type ATPase, flippase

  3. NM_104306.3 → NP_175830.1  ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175830.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SLK6
    UniProtKB/TrEMBL
    A0A178W9G7, A0A5S9WLU6
    Conserved Domains (1) summary
    TIGR01652
    Location:59 → 1172
    ATPase-Plipid; phospholipid-translocating P-type ATPase, flippase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SLK6.2

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