U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

GGPS6 geranylgeranyl pyrophosphate synthase 6 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841377, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
GGPS6
Official Full Name
geranylgeranyl pyrophosphate synthase 6
Primary source
TAIR:AT1G49530
Locus tag
AT1G49530
See related
Araport:AT1G49530
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14J22.23; geranylgeranyl pyrophosphate synthase 6
Summary
encodes a mitochondria-targeted geranylgeranyl pyrophosphate synthase
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See GGPS6 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (18332429..18333689)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene embryo defective 1273 Neighboring gene SWIB complex BAF60b domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene elongator protein 2 Neighboring gene pseudo

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A Single Arabidopsis Gene Encodes Two Differentially Targeted Geranylgeranyl Diphosphate Synthase Isoforms. Ruiz-Sola MÁ, et al. Plant Physiol, 2016 Nov. PMID 27707890, Free PMC Article
  2. Geranylgeranyl pyrophosphate synthase encoded by the newly isolated gene GGPS6 from Arabidopsis thaliana is localized in mitochondria. Zhu XF, et al. Plant Mol Biol, 1997 Oct. PMID 9349257
  3. Five geranylgeranyl diphosphate synthases expressed in different organs are localized into three subcellular compartments in Arabidopsis. Okada K, et al. Plant Physiol, 2000 Apr. PMID 10759500, Free PMC Article
  4. Characterization of the GGPP synthase gene family in Arabidopsis thaliana. Beck G, et al. Plant Mol Biol, 2013 Jul. PMID 23729351
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. the absence of a strong transcription initiation site in the G11 gene results in the production of transcripts of different lengths.[GGPPS1]
    Title: A Single Arabidopsis Gene Encodes Two Differentially Targeted Geranylgeranyl Diphosphate Synthase Isoforms.
Submit: New GeneRIF Correction

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help

Homology

NM_103841.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables dimethylallyltranstransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables farnesyltranstransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables farnesyltranstransferase activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
enables geranyltranstransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in farnesyl diphosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in geranyl diphosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in geranylgeranyl diphosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within isoprenoid biosynthetic process TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
geranylgeranyl pyrophosphate synthase 6
NP_175376.1
  • geranylgeranyl pyrophosphate synthase 6 (GGPS6); CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: Terpenoid synthases superfamily protein (TAIR:AT3G20160.1); Has 16450 Blast hits to 16445 proteins in 2927 species: Archae - 341; Bacteria - 9363; Metazoa - 273; Fungi - 440; Plants - 451; Viruses - 12; Other Eukaryotes - 5570 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    18332429..18333689
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103841.3 → NP_175376.1  geranylgeranyl pyrophosphate synthase 6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175376.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O22043, Q9XIC0
    UniProtKB/TrEMBL
    A0A654ESR6
    Conserved Domains (1) summary
    cd00685
    Location:67 → 334
    Trans_IPPS_HT; Trans-Isoprenyl Diphosphate Synthases, head-to-tail
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O22043.2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools