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TCP family transcription factor [ Arabidopsis thaliana (thale cress) ]

Gene ID: 840452, updated on 18-Sep-2024

Summary

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Official Full Name
TCP family transcription factor
Primary source
TAIR:AT1G35560
Locus tag
AT1G35560
See related
Araport:AT1G35560
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtTCP23; F15O4.35; TCP domain protein 23; TCP23
Summary
Encodes a member of the TCP-P subfamily that is involved in flowering time control and plant development. Mutants present an early flowering phenotype.
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (13115824..13117235, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene auxin response factor 14 Neighboring gene ncRNA Neighboring gene elongation factor Tu C-terminal domain-containing protein Neighboring gene pseudo Neighboring gene cytosolic invertase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional study of TCP23 in Arabidopsis thaliana during plant development. Balsemão-Pires E, et al. Plant Physiol Biochem, 2013 Jun. PMID 23562796
  2. The N-terminal region located upstream of the TCP domain is responsible for the antagonistic action of the Arabidopsis thaliana TCP8 and TCP23 transcription factors on flowering time. Camoirano A, et al. Plant Sci, 2023 Mar. PMID 36535527
  3. Analysis of the role of Arabidopsis class I TCP genes AtTCP7, AtTCP8, AtTCP22, and AtTCP23 in leaf development. Aguilar-Martínez JA, et al. Front Plant Sci, 2013. PMID 24137171, Free PMC Article
  4. The Arabidopsis immune adaptor SRFR1 interacts with TCP transcription factors that redundantly contribute to effector-triggered immunity. Kim SH, et al. Plant J, 2014 Jun. PMID 24689742
  5. Class I TCP-DELLA interactions in inflorescence shoot apex determine plant height. Davière JM, et al. Curr Biol, 2014 Aug 18. PMID 25127215

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The N-terminal region located upstream of the TCP domain is responsible for the antagonistic action of the Arabidopsis thaliana TCP8 and TCP23 transcription factors on flowering time.
    Title: The N-terminal region located upstream of the TCP domain is responsible for the antagonistic action of the Arabidopsis thaliana TCP8 and TCP23 transcription factors on flowering time.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_103253.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables identical protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within regulation of timing of transition from vegetative to reproductive phase IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
TCP family transcription factor
NP_174789.1
  • TCP family transcription factor; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT1G72010.1); Has 382 Blast hits to 382 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 2; Plants - 349; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    13115824..13117235 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103253.2 → NP_174789.1  TCP family transcription factor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174789.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LQF0
    UniProtKB/TrEMBL
    A0A5S9WM12, A0A654EKM9
    Conserved Domains (1) summary
    pfam03634
    Location:54 → 125
    TCP; TCP family transcription factor
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LQF0.1

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