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SPL10 squamosa promoter binding protein-like 10 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839626, updated on 18-Sep-2024

Summary

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Official Symbol
SPL10
Official Full Name
squamosa promoter binding protein-like 10
Primary source
TAIR:AT1G27370
Locus tag
AT1G27370
See related
Araport:AT1G27370
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17L21.15; F17L21_15; squamosa promoter binding protein-like 10
Summary
In conjunction with SPL11 and SPL2, SPL10 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase. SPL10 also controls lamina shape during vegetative development.
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Genomic context

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See SPL10 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (9505112..9508542, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene Ribosome associated membrane protein RAMP4 Neighboring gene squamosa promoter-like 11 Neighboring gene ROP-interactive CRIB motif-containing protein 2 Neighboring gene phosphoribosylformylglycinamidine synthase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. miR156-targeted SPL10 controls Arabidopsis root meristem activity and root-derived de novo shoot regeneration via cytokinin responses. Barrera-Rojas CH, et al. J Exp Bot, 2020 Jan 23. PMID 31642910
  2. Regulation of flowering time by SPL10/MED25 module in Arabidopsis. Yao T, et al. New Phytol, 2019 Oct. PMID 31125430
  3. miR156/SPL10 Modulates Lateral Root Development, Branching and Leaf Morphology in Arabidopsis by Silencing AGAMOUS-LIKE 79. Gao R, et al. Front Plant Sci, 2017. PMID 29354153, Free PMC Article
  4. WRKY transcription factors WRKY12 and WRKY13 interact with SPL10 to modulate age-mediated flowering. Ma Z, et al. J Integr Plant Biol, 2020 Nov. PMID 32396254
  5. Arabidopsis SBP-box genes SPL10, SPL11 and SPL2 control morphological change in association with shoot maturation in the reproductive phase. Shikata M, et al. Plant Cell Physiol, 2009 Dec. PMID 19880401

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. WRKY transcription factors WRKY12 and WRKY13 interact with SPL10 to modulate age-mediated flowering.
    Title: WRKY transcription factors WRKY12 and WRKY13 interact with SPL10 to modulate age-mediated flowering.
  2. miR156-targeted SPL10 controls Arabidopsis root meristem activity and root-derived de novo shoot regeneration via cytokinin responses.
    Title: miR156-targeted SPL10 controls Arabidopsis root meristem activity and root-derived de novo shoot regeneration via cytokinin responses.
  3. SPL10 recruits MED25 to the promoters of target genes to regulate flowering time.
    Title: Regulation of flowering time by SPL10/MED25 module in Arabidopsis.
  4. SPL10, SPL11 and SPL2 regulate morphological traits of cauline leaves and flowers, and control shoot maturation not only in the vegetative phase but also in the reproductive phase.
    Title: Arabidopsis SBP-box genes SPL10, SPL11 and SPL2 control morphological change in association with shoot maturation in the reproductive phase.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_001036019.3
NM_001084136.1
NM_001332754.1
NM_001332756.1
NM_102499.4
NM_202192.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables sequence-specific DNA binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within leaf shaping IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within negative regulation of auxin metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within regulation of timing of transition from vegetative to reproductive phase IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
squamosa promoter binding protein-like 10
NP_001031096.2
  • squamosa promoter binding protein-like 10 (SPL10); FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: leaf shaping, regulation of transcription, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-like 11 (TAIR:AT1G27360.4); Has 868 Blast hits to 867 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 857; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_001319090.1
  • squamosa promoter binding protein-like 10 (SPL10); FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: leaf shaping, regulation of transcription, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-like 11 (TAIR:AT1G27360.4); Has 868 Blast hits to 867 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 857; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_174057.2
  • squamosa promoter binding protein-like 10 (SPL10); FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: leaf shaping, regulation of transcription, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-like 11 (TAIR:AT1G27360.4); Has 868 Blast hits to 867 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 857; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_973921.1
  • squamosa promoter binding protein-like 10 (SPL10); FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: leaf shaping, regulation of transcription, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-like 11 (TAIR:AT1G27360.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9505112..9508542 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001332755.1 → NP_001323271.1  squamosa promoter binding protein-like 10 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q2V4K9, Q8S9L0, Q9FZJ9, Q9ZW53
    UniProtKB/TrEMBL
    A0A178WJ37, A0A5S9W4F2, A0A654EEA5
    Conserved Domains (1) summary
    pfam03110
    Location:176 → 250
    SBP; SBP domain

  2. NM_202192.2 → NP_973921.1  squamosa promoter binding protein-like 10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973921.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q2V4K9, Q8S9L0, Q9FZJ9, Q9ZW53
    UniProtKB/TrEMBL
    A0A178WJ37, A0A5S9W4F2, A0A654EEA5
    Conserved Domains (1) summary
    pfam03110
    Location:176 → 250
    SBP; SBP domain

  3. NM_001036019.3 → NP_001031096.2  squamosa promoter binding protein-like 10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031096.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q2V4K9, Q8S9L0, Q9FZJ9, Q9ZW53
    UniProtKB/TrEMBL
    A0A178WJ37, A0A5S9W4F2, A0A654EEA5
    Conserved Domains (1) summary
    pfam03110
    Location:176 → 250
    SBP; SBP domain

  4. NM_102499.4 → NP_174057.2  squamosa promoter binding protein-like 10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174057.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q2V4K9, Q8S9L0, Q9FZJ9, Q9ZW53
    UniProtKB/TrEMBL
    A0A178WJ37, A0A5S9W4F2, A0A654EEA5
    Conserved Domains (1) summary
    pfam03110
    Location:176 → 250
    SBP; SBP domain

  5. NM_001332756.1 → NP_001323272.1  squamosa promoter binding protein-like 10 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AWI8, A0A654EEA5

  6. NM_001332754.1 → NP_001319090.1  squamosa promoter binding protein-like 10 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q2V4K9, Q8S9L0, Q9FZJ9, Q9ZW53
    UniProtKB/TrEMBL
    A0A178WJ37, A0A5S9W4F2, A0A654EEA5
    Conserved Domains (1) summary
    pfam03110
    Location:176 → 250
    SBP; SBP domain

  7. NM_001084136.1 → NP_001077605.1  squamosa promoter binding protein-like 10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077605.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q2V4K9, Q8S9L0, Q9FZJ9, Q9ZW53
    UniProtKB/TrEMBL
    A0A178WJ37, A0A5S9W4F2, A0A654EEA5
    Conserved Domains (1) summary
    pfam03110
    Location:176 → 250
    SBP; SBP domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8S9L0.2

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