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INO Plant-specific transcription factor YABBY family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838950, updated on 18-Sep-2024

Summary

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Official Symbol
INO
Official Full Name
Plant-specific transcription factor YABBY family protein
Primary source
TAIR:AT1G23420
Locus tag
AT1G23420
See related
Araport:AT1G23420
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F26F24.29; F26F24_29; INNER NO OUTER
Summary
Essential for formation and asymmetric growth of the ovule outer integument. Member of the YABBY protein family of putative transcription factors that contain apparent Cys(2)-Cys(2) zinc-finger domains and regions of similarity to the high mobility group (HMG) transcription factors. INO may be required for polarity determination in the central part of the ovule.
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Genomic context

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See INO in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (8317297..8319491)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Kelch repeat-containing F-box family protein Neighboring gene RNA-binding CRS1 / YhbY (CRM) domain-containing protein Neighboring gene Ribosomal protein S27a / Ubiquitin family protein Neighboring gene ncRNA Neighboring gene Peptidase C15, pyroglutamyl peptidase I-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Positive- and negative-acting regulatory elements contribute to the tissue-specific expression of INNER NO OUTER, a YABBY-type transcription factor gene in Arabidopsis. Simon MK, et al. BMC Plant Biol, 2012 Nov 13. PMID 23148487, Free PMC Article
  2. Independence and interaction of regions of the INNER NO OUTER protein in growth control during ovule development. Gallagher TL, et al. Plant Physiol, 2008 May. PMID 18326791, Free PMC Article
  3. SUPERMAN attenuates positive INNER NO OUTER autoregulation to maintain polar development of Arabidopsis ovule outer integuments. Meister RJ, et al. Development, 2002 Sep. PMID 12183380
  4. INNER NO OUTER regulates abaxial- adaxial patterning in Arabidopsis ovules. Villanueva JM, et al. Genes Dev, 1999 Dec 1. PMID 10601041, Free PMC Article
  5. Brassinosteroids regulate outer ovule integument growth in part via the control of INNER NO OUTER by BRASSINOZOLE-RESISTANT family transcription factors. Jia D, et al. J Integr Plant Biol, 2020 Aug. PMID 32009278

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Brassinosteroids regulate outer ovule integument growth in part via the control of INNER NO OUTER by BRASSINOZOLE-RESISTANT family transcription factors.
    Title: Brassinosteroids regulate outer ovule integument growth in part via the control of INNER NO OUTER by BRASSINOZOLE-RESISTANT family transcription factors.
  2. we find that INO can directly interact with ADA2b/PROPORZ1 (PRZ1), a transcriptional coactivator that is known to interact with the histone acetyltransferase GENERAL CONTROL NONREPRESSIBLE PROTEIN 5 (GCN5, also known as HAG1).
    Title: Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors.
  3. At least two independent regions of the INO promoter contain sufficient regulatory information to direct the specific pattern but not the level of INO gene expression.
    Title: Positive- and negative-acting regulatory elements contribute to the tissue-specific expression of INNER NO OUTER, a YABBY-type transcription factor gene in Arabidopsis.
  4. Promotion of growth of the outer integument of the ovule required a coordination of features along the entire length of the INO protein.
    Title: Independence and interaction of regions of the INNER NO OUTER protein in growth control during ovule development.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_102191.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within plant ovule development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within polarity specification of adaxial/abaxial axis IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Plant-specific transcription factor YABBY family protein
NP_564194.1
  • INNER NO OUTER (INO); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: plant-specific transcription factor YABBY family protein (TAIR:AT2G26580.2); Has 465 Blast hits to 458 proteins in 128 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 444; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    8317297..8319491
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001332600.1 → NP_001320962.1  Plant-specific transcription factor YABBY family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8APE2, A0ME87

  2. NM_102191.6 → NP_564194.1  Plant-specific transcription factor YABBY family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564194.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LDT3, Q9SE21
    UniProtKB/TrEMBL
    A0A654ECK4, A0ME87, Q1PFT2
    Conserved Domains (1) summary
    pfam04690
    Location:16 → 182
    YABBY; YABBY protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LDT3.2

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