AT1G22080 Cysteine proteinases superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Gene symbol: AT1G22080
Gene description: Cysteine proteinases superfamily protein
Primary source: Araport:AT1G22080
Locus tag: AT1G22080
See related: TAIR:AT1G22080
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F2E2.15; F2E2_15
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Genomic context

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See AT1G22080 in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 10

Sequence:: Chromosome: 1; NC_003070.9 (7792192..7795440, complement)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001123858.1

Supported by ESTs:

NM_102058.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Cysteine proteinases superfamily protein

NP_001117330.1

Cysteine proteinases superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19515.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NP_173627.2

Cysteine proteinases superfamily protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19515.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

7792192..7795440 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001123858.1 → NP_001117330.1 Cysteine proteinases superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001117330.1

Status: REVIEWED

UniProtKB/TrEMBL

F4HZT2, Q5Q0F6

Conserved Domains (1) summary

cl23744
Location:4 → 156

Peptidase_C1; C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some ...
NM_102058.2 → NP_173627.2 Cysteine proteinases superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_173627.2

Status: REVIEWED

UniProtKB/TrEMBL

F4HZT2, Q5Q0F6

Conserved Domains (1) summary

cl23744
Location:4 → 156

Peptidase_C1; C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some ...