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sequence-specific DNA binding transcription factor [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838715, updated on 18-Sep-2024

Summary

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Official Full Name
sequence-specific DNA binding transcription factor
Primary source
TAIR:AT1G21200
Locus tag
AT1G21200
See related
Araport:AT1G21200
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F16F4.11; F16F4_11
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (7421148..7423673)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 2 (eIF-2) family protein Neighboring gene Exocyst complex component SEC5 Neighboring gene Small nuclear ribonucleoprotein family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene wall associated kinase 4 Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  2. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_101973.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
sequence-specific DNA binding transcription factor
NP_564136.1
  • sequence-specific DNA binding transcription factors; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76870.1); Has 317 Blast hits to 297 proteins in 56 species: Archae - 2; Bacteria - 28; Metazoa - 67; Fungi - 2; Plants - 135; Viruses - 9; Other Eukaryotes - 74 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    7421148..7423673
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001332489.1 → NP_001322826.1  sequence-specific DNA binding transcription factor [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W4V4, A0A384L780, A0A654EMJ0, Q9LMN5
    Conserved Domains (2) summary
    PRK03992
    Location:374 → 424
    PRK03992; proteasome-activating nucleotidase; Provisional
    pfam13837
    Location:116 → 204
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

  2. NM_101973.3 → NP_564136.1  sequence-specific DNA binding transcription factor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564136.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W4V4, A0A384L780, A0A654EMJ0, Q9LMN5
    Conserved Domains (2) summary
    PRK03992
    Location:374 → 424
    PRK03992; proteasome-activating nucleotidase; Provisional
    pfam13837
    Location:116 → 204
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
Nucleotide Protein
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