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[ Arabidopsis thaliana (thale cress) ]

Gene ID: 838091, updated on 11-Sep-2024

Summary

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Primary source
TAIR:AT1G15240
Locus tag
AT1G15240
See related
Araport:AT1G15240
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F9L1.19; F9L1_19
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Genomic context

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Location:
chromosome: 1
Exon count:
14
Sequence:
Chromosome: 1; NC_003070.9 (5243383..5248693)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene SAWADEE HOMEODOMAIN protein Neighboring gene cytochrome c biogenesis protein family Neighboring gene uncharacterized protein Neighboring gene Zinc-binding ribosomal protein family protein Neighboring gene LOW protein: ATP-dependent RNA helicase-like protein Neighboring gene Translation machinery associated TMA7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Learning the lipid language of plant signalling. van Leeuwen W, et al. Trends Plant Sci, 2004 Aug. PMID 15358268
  2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Markers

  • At1g15240_Arabidopsis_lyrata_ssp._lyrata_CAN1 (e-PCR)
  • At1g15240_Arabidopsis_lyrata_ssp._petraea_GER1 (e-PCR)

Homology

NM_001160871.2
NM_001198073.1
NM_001332156.1
NM_001332157.1
NM_101392.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
  
enables phosphatidylinositol binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within signal transduction ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
phox (PX) domain-containing protein
NP_001154343.1
  • Phox-associated domain;Phox-like;Sorting nexin, C-terminal; CONTAINS InterPro DOMAIN/s: PX-associated, sorting nexin 13 (InterPro:IPR013996), Sorting nexin, C-terminal (InterPro:IPR013937), Phox-like (InterPro:IPR001683), Phox-associated domain (InterPro:IPR003114); BEST Arabidopsis thaliana protein match is: Phox-associated domain;Phox-like;Sorting nexin, C-terminal (TAIR:AT2G15900.1); Has 944 Blast hits to 779 proteins in 177 species: Archae - 0; Bacteria - 4; Metazoa - 546; Fungi - 164; Plants - 152; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).
NP_001185002.1
  • Phox-associated domain;Phox-like;Sorting nexin, C-terminal; CONTAINS InterPro DOMAIN/s: PX-associated, sorting nexin 13 (InterPro:IPR013996), Sorting nexin, C-terminal (InterPro:IPR013937), Phox-like (InterPro:IPR001683), Phox-associated domain (InterPro:IPR003114); BEST Arabidopsis thaliana protein match is: Phox-associated domain;Phox-like;Sorting nexin, C-terminal (TAIR:AT2G15900.1).
NP_001319008.1
  • Phox-associated domain;Phox-like;Sorting nexin, C-terminal; CONTAINS InterPro DOMAIN/s: Phox-like (InterPro:IPR001683), Phox-associated domain (InterPro:IPR003114); BEST Arabidopsis thaliana protein match is: Phox-associated domain;Phox-like;Sorting nexin, C-terminal (TAIR:AT2G15900.1); Has 583 Blast hits to 560 proteins in 162 species: Archae - 0; Bacteria - 8; Metazoa - 268; Fungi - 113; Plants - 135; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5243383..5248693
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001332156.1 → NP_001319008.1  phox (PX) domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WLB4, Q8GZ64

  2. NM_001160871.2 → NP_001154343.1  phox (PX) domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154343.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9UIS7, F4HZJ6
    Conserved Domains (3) summary
    cd06872
    Location:613 → 725
    PX_SNX19_like_plant; The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins
    pfam02194
    Location:107 → 282
    PXA; PXA domain
    pfam08628
    Location:858 → 978
    Nexin_C; Sorting nexin C terminal

  3. NM_001332157.1 → NP_001323344.1  phox (PX) domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WLB4, Q8GZ64

  4. NM_001198073.1 → NP_001185002.1  phox (PX) domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185002.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9UIS7, A0A654EAT3, F4HZJ7
    Conserved Domains (3) summary
    cd06872
    Location:613 → 725
    PX_SNX19_like_plant; The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins
    pfam02194
    Location:107 → 282
    PXA; PXA domain
    pfam08628
    Location:858 → 975
    Nexin_C; Sorting nexin C terminal

  5. NM_101392.3 → NP_172976.2  phox (PX) domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172976.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WLB4, Q8GZ64
    Conserved Domains (2) summary
    pfam02194
    Location:107 → 282
    PXA; PXA domain
    cl02563
    Location:613 → 698
    PX_domain; The Phox Homology domain, a phosphoinositide binding module
Nucleotide Protein
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