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GPI transamidase subunit PIG-U [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837829, updated on 18-Sep-2024

Summary

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Official Full Name
GPI transamidase subunit PIG-U
Primary source
TAIR:AT1G12730
Locus tag
AT1G12730
See related
Araport:AT1G12730
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T12C24.26; T12C24_26
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Genomic context

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Location:
chromosome: 1
Exon count:
14
Sequence:
Chromosome: 1; NC_003070.9 (4334499..4337957)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene cytochrome P450, family 87, subfamily A, polypeptide 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_101143.4
NM_202084.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in attachment of GPI anchor to protein IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of GPI-anchor transamidase complex IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
GPI transamidase subunit PIG-U
NP_563912.1
  • GPI transamidase subunit PIG-U; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GPI transamidase subunit PIG-U (InterPro:IPR009600); BEST Arabidopsis thaliana protein match is: GPI transamidase subunit PIG-U (TAIR:AT1G63110.1); Has 339 Blast hits to 333 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 121; Plants - 55; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
NP_973813.1
  • GPI transamidase subunit PIG-U; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GPI transamidase subunit PIG-U (InterPro:IPR009600); BEST Arabidopsis thaliana protein match is: GPI transamidase subunit PIG-U (TAIR:AT1G63110.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    4334499..4337957
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101143.4 → NP_563912.1  GPI transamidase subunit PIG-U [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563912.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654E959, Q94K70
    Conserved Domains (1) summary
    pfam06728
    Location:24 → 442
    PIG-U; GPI transamidase subunit PIG-U

  2. NM_202084.2 → NP_973813.1  GPI transamidase subunit PIG-U [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973813.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9U254, F4IDV8
    Conserved Domains (1) summary
    pfam06728
    Location:23 → 358
    PIG-U; GPI transamidase subunit PIG-U
Nucleotide Protein
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