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Clathrin adaptor complexes medium subunit family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837616, updated on 18-Sep-2024

Summary

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Official Full Name
Clathrin adaptor complexes medium subunit family protein
Primary source
TAIR:AT1G10730
Locus tag
AT1G10730
See related
Araport:AT1G10730
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
adaptor protein-1 mu-adaptin 1; AP1M1; T16B5.13; T16B5_13
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Genomic context

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Location:
chromosome: 1
Exon count:
11
Sequence:
Chromosome: 1; NC_003070.9 (3565257..3568106)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene EMBRYO SURROUNDING FACTOR-like protein Neighboring gene BSD domain-containing protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene maternally expressed family protein Neighboring gene maternally expressed family protein Neighboring gene carboxyl-terminal peptidase, putative (DUF239)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis μ-adaptin subunit AP1M of adaptor protein complex 1 mediates late secretory and vacuolar traffic and is required for growth. Park M, et al. Proc Natl Acad Sci U S A, 2013 Jun 18. PMID 23733933, Free PMC Article
  2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Coimmunoprecipitation revealed that muB1 (At1g10730) is complexed with the large subunit gamma-adaptin of AP-1.
    Title: Arabidopsis μ-adaptin subunit AP1M of adaptor protein complex 1 mediates late secretory and vacuolar traffic and is required for growth.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_100949.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of clathrin adaptor complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Clathrin adaptor complexes medium subunit family protein
NP_172543.1
  • Clathrin adaptor complexes medium subunit family protein; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: clathrin vesicle coat, clathrin adaptor complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Clathrin adaptor, mu subunit (InterPro:IPR001392), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: Clathrin adaptor complexes medium subunit family protein (TAIR:AT1G60780.1); Has 2200 Blast hits to 2139 proteins in 330 species: Archae - 0; Bacteria - 0; Metazoa - 1104; Fungi - 504; Plants - 215; Viruses - 0; Other Eukaryotes - 377 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    3565257..3568106
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100949.2 → NP_172543.1  Clathrin adaptor complexes medium subunit family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172543.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SAC9, Q9SGX7
    UniProtKB/TrEMBL
    A0A178WI53, A0A5S9TQV3, A0A654E9K9
    Conserved Domains (2) summary
    cd09250
    Location:156 → 426
    AP-1_Mu1_Cterm; C-terminal domain of medium Mu1 subunit in clathrin-associated adaptor protein (AP) complex AP-1
    cd14835
    Location:6 → 145
    AP1_Mu_N; AP-1 complex subunit mu N-terminal domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SAC9.1

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