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Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837138, updated on 18-Sep-2024

Summary

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Official Full Name
Pentatricopeptide repeat (PPR) superfamily protein
Primary source
TAIR:AT1G06270
Locus tag
AT1G06270
See related
Araport:AT1G06270
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F9P14.13; F9P14_13
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (1917991..1919760, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene diiron containing four-helix bundle family ferritin protein, putative (Protein of unknown function DUF455) Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene ncRNA Neighboring gene Cysteine proteinases superfamily protein Neighboring gene LOB domain-containing protein 2 Neighboring gene acyl-CoA oxidase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Pentatricopeptide repeat protein MID1 modulates nad2 intron 1 splicing and Arabidopsis development. Zhao P, et al. Sci Rep, 2020 Feb 6. PMID 32029763, Free PMC Article
  2. In-depth temporal transcriptome profiling reveals a crucial developmental switch with roles for RNA processing and organelle metabolism that are essential for germination in Arabidopsis. Narsai R, et al. Plant Physiol, 2011 Nov. PMID 21908688, Free PMC Article
  3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Pentatricopeptide repeat protein MID1 modulates nad2 intron 1 splicing and Arabidopsis development.
    Title: Pentatricopeptide repeat protein MID1 modulates nad2 intron 1 splicing and Arabidopsis development.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_100509.5

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in plastid membrane HDA PubMed 

General protein information

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Preferred Names
Pentatricopeptide repeat (PPR) superfamily protein
NP_563765.1
  • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: rna processing factor 2 (TAIR:AT1G62670.1); Has 12812 Blast hits to 4675 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 12587; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    1917991..1919760 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100509.5 → NP_563765.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563765.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LNC0
    UniProtKB/TrEMBL
    A0A178WJX2, A0A654E8I6
    Conserved Domains (2) summary
    sd00004
    Location:171 → 200
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:169 → 217
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LNC0.1

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