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[ Arabidopsis thaliana (thale cress) ]

Gene ID: 836744, updated on 22-Aug-2024

Summary

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Primary source
Araport:AT5G66120
Locus tag
AT5G66120
See related
TAIR:AT5G66120
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K2A18.20; K2A18_20
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Genomic context

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Location:
chromosome: 5
Exon count:
8
Sequence:
Chromosome: 5; NC_003076.8 (26431376..26433900, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene cell wall integrity/stress response component Neighboring gene winged-helix DNA-binding transcription factor family protein Neighboring gene Heavy metal transport/detoxification superfamily protein Neighboring gene RADIATION SENSITIVE 17 Neighboring gene proteasome alpha subunit D2 Neighboring gene Glycosyl hydrolase family 38 protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A split-ubiquitin yeast two-hybrid screen to examine the substrate specificity of atToc159 and atToc132, two Arabidopsis chloroplast preprotein import receptors. Dutta S, et al. PLoS One, 2014. PMID 24736607, Free PMC Article
  2. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
  3. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  4. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
  5. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_126010.3
NM_180948.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables 3-dehydroquinate synthase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in chorismate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast stroma HDA PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in endosome HDA PubMed 
located_in trans-Golgi network HDA PubMed 

General protein information

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Preferred Names
3-dehydroquinate synthase
NP_569029.1
  • 3-dehydroquinate synthase, putative; FUNCTIONS IN: 3-dehydroquinate synthase activity; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase AroB, subgroup (InterPro:IPR016037), 3-dehydroquinate synthase AroB (InterPro:IPR002658); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_851279.1
  • 3-dehydroquinate synthase, putative; FUNCTIONS IN: 3-dehydroquinate synthase activity, carbon-oxygen lyase activity, acting on phosphates; INVOLVED IN: aromatic amino acid family biosynthetic process, biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase AroB, subgroup (InterPro:IPR016037), 3-dehydroquinate synthase (InterPro:IPR016303), 3-dehydroquinate synthase AroB (InterPro:IPR002658); Has 8426 Blast hits to 8421 proteins in 2521 species: Archae - 162; Bacteria - 5225; Metazoa - 16; Fungi - 182; Plants - 46; Viruses - 2; Other Eukaryotes - 2793 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    26431376..26433900 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126010.3 → NP_569029.1  3-dehydroquinate synthase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_569029.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JZ33, Q8LFK9, Q8VYV7, Q9FKX0
    UniProtKB/TrEMBL
    A0A178UAH5, A0A5S9YHQ1
    Conserved Domains (1) summary
    PLN02834
    Location:5 → 442
    PLN02834; 3-dehydroquinate synthase

  2. NM_180948.2 → NP_851279.1  3-dehydroquinate synthase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851279.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VYV7
    Conserved Domains (1) summary
    PLN02834
    Location:1 → 338
    PLN02834; 3-dehydroquinate synthase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VYV7.1

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